Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq15 93.3 4e-14 >seq15 Length=603150 Score = 93.3 bits (102), Expect = 4e-14 Identities = 275/415 (66%), Gaps = 17/415 (4%) Strand=Plus/Plus Query 50319 tttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGC 50378 || || || ||| |||||| |||| || | |||| | ||| | ||||| ||| Sbjct 375944 TTCTTCTCTGGTGCCTTTGCTTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGC 376003 Query 50379 CTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGT 50438 | || || ||||||| | ||||| |||||||| || |||||||| ||||| || || Sbjct 376004 TTGACCTTCTCCAACGAGCTCATTTCACGCGACGAGGGTATGCACACCGACTTCGCCTGC 376063 Query 50439 TTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTT-TG---GACAT 50494 || || || | | || ||||| | | | | | | || | ||| Sbjct 376064 CTGCTCTTCAGCATG-------ATTCAAAATAAGCCGTCTCCAGAGTCGGTGCGTGCCAT 376116 Query 50495 GTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCAT- 50553 ||| || || ||| |||||| |||||||| |||| || || | || || | Sbjct 376117 CATCACCGAGGCTGTCTCCATCGAGAAAGAGTTCCTCACCGAAGCCCTGCCT-TGCCGCC 376175 Query 50554 TGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGT 50613 || | || ||||| |||||| | |||||| |||||||||||||||| |||||| | ||| Sbjct 376176 TGCTCGGTATGAATGCAGACCTTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGC 376235 Query 50614 TGTTGCAGCTGGGACAAC-CGAAATACTATAATGC-ACGTAACCCCTTTCCGTTTATGAA 50671 | || || || |||| | || || || || ||| ||||| || || ||| | Sbjct 376236 TCATGGCTCTCGG-CAACACAAAGGTGTACAACGCGACG-AACCCGTTCGACTTCATGGA 376293 Query 50672 TAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50726 ||||| ||| ||| ||||| ||||| || ||||| | || || ||||| ||| Sbjct 376294 GAACATCTCGCTGGCAGGCAAGACAAATTTCTTCGAGAAGCGCGTTGGCGACTAC 376348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488541758804400