Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq23 136 8e-27 >seq23 Length=461238 Score = 136 bits (150), Expect = 8e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||||||| || || || || || || || || || || | | ||| Sbjct 205308 ACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACC 205249 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| || ||||| ||||| | | || |||||||| || || || ||||| Sbjct 205248 ATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTT 205189 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTA 82773 ||||||||||| | || ||||| |||||||| || | ||| ||| ||||| | || | Sbjct 205188 GTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTC-TGAGGATTCAACTTCTAGGGTGA 205130 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| ||||| | |||||| || || || ||||| Sbjct 205129 TCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || | |||||||||||| || || || ||||| || |||| Sbjct 205093 TACCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAG 205034 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || ||||| ||||| ||||| || | || || ||||| | Sbjct 205033 ACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTG 204974 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || ||||| || | || || || || || |||||| | || | Sbjct 204973 GGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGA 204914 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || |||| ||||| || || |||||||| Sbjct 204913 CCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981822583264413