Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10 291 8e-74 seq15 187 2e-42 seq23 93.3 4e-14 >seq10 Length=848763 Score = 291 bits (322), Expect = 8e-74 Identities = 1124/1738 (65%), Gaps = 57/1738 (3%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG-TCGCTTTAT 148111 |||||| |||||||||||||||||||| || |||||||| | |||| | || || Sbjct 459754 GACTGGGATTGGTCAATGAACGCGCCACGATCGGCGGCCATCTGGATGACATGGCGTTGG 459813 Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171 ||| || |||||| |||||||||||| || |||| ||| |||||| ||||| Sbjct 459814 CTT-ATTTCCCAGACCGTCTTGTACAATGCTTTAATATCATCTGGAATGTTTGGAATGCG 459872 Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 ||| | ||| || | | ||||| || | || ||| | ||| | | | | Sbjct 459873 CTGAATCGAACCACCCTCCGCAATGATGCGGTTCTTCATATTGTCAGACCACAAACCCAT 459932 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 || | || || | || || | |||| || ||||| |||||||||||||||||||| Sbjct 459933 GTCAACGAGATCTTTGAGCAACCAAGGATTGACGACCTGGAACTCGCCGGCGAGCACGCG 459992 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || || | ||| ||| | || || || |||||||||| |||| ||||| | Sbjct 459993 ACGTGAGTAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGA 460052 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 || | || || |||||| ||| || || | |||||||| | ||| | ||||| | Sbjct 460053 AGTTGAAGCGGTTGGCATGGGCGCCACGAGTAAGGAGTTGCGGACACCATGCTTTTTGA- 460111 Query 148412 TTTGCGCTTCAGAGCCG-CCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 | | |||| || | ||||||||||||| | || ||||||||||||||||| | Sbjct 460112 TCTCAGCTTTGAGGCTGTCCCAGTCCCAGAGATCAGTTGGAGTCACGTTCCACATGTCAT 460171 Query 148471 ACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTA---CGAGCTGTACGGTCCGTGCG 148527 |||||| ||| || || |||| |||||| || ||| || || || ||| Sbjct 460172 ACTGCAAAATCCCCTGGGACACGGGCGAGCCCTCATAACTCGA---ATAGGGACCTTGCT 460228 Query 148528 CCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCC 148587 | || || || || || || ||| ||| ||| || || || ||||| Sbjct 460229 CTTTGGCAAGCTCACACGAAGCTGTCAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGA 460288 Query 148588 TGTTGAGCA---GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGT 148644 |||| |||| | ||| | | | ||| | |||| ||||| | || || | Sbjct 460289 TGTTCAGCATACGAGCCTCTGGAGAG---TCGAATGGCAGCCGCAGAGCGAGGAAAGCAT 460345 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 ||||||| ||||| || || || || || || |||||| | ||||| | || || | Sbjct 460346 CGGCAAGACCCTGCACACCGACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGC-C 460404 Query 148705 TCTCG-AGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTT 148762 ||| | | || |||||||| ||||||||||||| ||||| ||||| || || Sbjct 460405 TCTGGTACAGGGTAGTGGTTAATGTCGATGATCTTGTTCAAG-TTGCGAACGACATGGCG 460463 Query 148763 TGTAATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATGCATC------GGTT 148816 || | ||||| | || ||||| | | || | || |||| |||| Sbjct 460464 GGTGACCTCATGCAGCTTCTTGAAGTCGTATTCGCCACGCATGA--CATCGACAAAGGTT 460521 Query 148817 --CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 || || | |||||| | || ||||| || ||| || ||||| ||||||| | | Sbjct 460522 GGCAGAGCCAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATG 460581 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 ||||||| ||| || ||| || ||| |||| ||| || || |||||||||| | Sbjct 460582 ATCTCGGTGCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGG 460641 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG 148994 ||||| ||||||||||| |||||| | || |||||| || ||| | | | ||| Sbjct 460642 TTGCAAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATG 460701 Query 148995 --AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCG-TAGCGACCCTCCTGCTCGTA- 149050 | | | ||| | ||| || || | | | | || || ||||||| |||||| Sbjct 460702 GCATACCA--CAGCTTCTGAGCACGGA-TGGTCTCACGACCACGGCCCTCCTTCTCGTAT 460758 Query 149051 -TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGT 149109 | ||||| || ||| ||| | ||||||||| |||| |||| || || | | Sbjct 460759 TTCTCGTATAGGGC--CTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCAT 460816 Query 149110 GCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCA 149169 || || | ||| | ||||| || | | | || || ||||| |||||||| ||| Sbjct 460817 TGGGACAGAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCG 460876 Query 149170 CCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCA 149229 ||| | || || | ||| || || || | ||||| || ||| ||||| Sbjct 460877 TCCACAAAGCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCA 460936 Query 149230 GGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCT 149289 || ||| || || ||||| || ||||| ||||||| ||| | |||| || || Sbjct 460937 AGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGG 460996 Query 149290 TGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAG 149346 |||| ||||| ||||| || || | || | || | | || || | ||||| Sbjct 460997 GGCGCTTGTTGCCACCCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAG 461056 Query 149347 GTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCAC 149404 | | || ||| |||||||| ||| | |||| ||| || ||| || | Sbjct 461057 GAATTAGACCGTTGGATGTGCCGTTGGTACCACCAATGTACGA--ACCAGTCGCACGAAT 461114 Query 149405 TTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAG 149464 ||| ||||| | |||||||| ||| | |||||| || || ||| ||| Sbjct 461115 GCGGTGTACGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAG 461174 Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524 ||| |||||||||||| |||||||| |||||| | || ||||| ||| | | Sbjct 461175 CGTGTCGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAG 461234 Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTG 149584 ||||| | ||||||| || |||| ||||| |||||||| || || || | Sbjct 461235 CTGCGGCGACGGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATT 461294 Query 149585 GCTCATCATCTCGTACGACTCGA--GCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 ||| ||||| | ||| | |||| | || ||||| || || || ||||| | Sbjct 461295 CGACATGTAGTCGTAAGTCTCAATGGCACTC--TCAATGTCTTCACCGTGTATGCCAACC 461352 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGC 149699 || || ||||| | ||| ||||| |||| ||| ||||| ||| ||| ||| ||| Sbjct 461353 GCAACACGCATAATCATGTGCTGTGGTCTCTCTGCCACCTTG---CCATTGATTCGGAGA 461409 Query 149700 AAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757 | |||| | || | ||| ||| ||||||| |||| ||||| ||||| ||| ||| Sbjct 461410 AGGTAGGACCTCTCCAATGTTTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTCGT 461467 >seq15 Length=603150 Score = 187 bits (206), Expect = 2e-42 Identities = 359/521 (69%), Gaps = 19/521 (4%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||| ||||| ||||| || || ||||| ||||| ||| ||| ||||| | Sbjct 376351 CTGGTAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTC 376292 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||||||||| ||||||| | || | | ||| | | ||||| Sbjct 376291 CATGAAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGCCGAGAGCCATGAGCAA 376232 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACAT--GGACTGCGCGTTCATGCCCAGCAA- 120527 ||||| ||||||||||||||||||| |||||| || |||| ||||| || |||| Sbjct 376231 GCGGTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCA--TTCATACCGAGCAGG 376174 Query 120528 CGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT 120587 || || |||| || |||| ||||| ||||| ||| || ||||| ||| || Sbjct 376173 CGGCAA-GGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGATGAT 376115 Query 120588 GGCGAGCATAG--TGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645 ||| ||| | | ||| | | ||| | || || | | | | || |||||| Sbjct 376114 GGCACGCACCGACTCTGGA--GACGGCTTATTTTGAAT---CATGCTGAAGAGCAGGCAG 376060 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 || ||||| ||||||| ||||||||||| || || ||||||||| || |||| ||| Sbjct 376059 GCGAAGTCGGTGTGCATACCCTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAGCCC 376000 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||||| ||| | |||| | |||| |||| |||||| || || ||||| | | Sbjct 375999 GGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGAAGCAAAGGCACCAGAGAAGAAGATG 375940 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC---G 120822 ||||||||| || ||||||| | ||| ||| || || | |||||||| | Sbjct 375939 CCCTCCACGGCAGCGAAGGCGATGAGGCGTGAGGCGAAGGT---GGAGTTGCTGTCAGAG 375883 Query 120823 ATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||| | ||||| || ||||| ||||| | ||| || Sbjct 375882 ATCCAGCGGAGCGCCCAGTCAGCCTTCTTGCGAATGCAAGG 375842 >seq23 Length=461238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || |||||||| || || || | | | || |||||||| || || Sbjct 205061 GTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCA-TCTTCGAGCTGTTTACC 205003 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| | || || ||||||||||| || |||||||| |||||||| ||| ||| | || Sbjct 205002 AGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC-CTGAATTTTGGTCT 204944 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | ||| || || | |||| ||| || || ||||||| Sbjct 204943 TGACGTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAG 204884 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 204883 TCTTGACGAAGATCTGCAT 204865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATG 133532 ||||| || ||||| ||| || ||| ||| |||||||| || || ||| | || Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 || ||||||||||| || |||||||| |||||||| ||||| ||| | | || Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | ||||||| | ||| || |||| ||||| ||| ||||| |||| Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418582307080