Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq23 102 8e-17 seq15 84.2 2e-11 >seq23 Length=461238 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| |||||||| || ||||| |||||||||||||||||| | Sbjct 205058 GACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCG 204999 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || ||||| || ||||| || || || |||||| || | Sbjct 204998 AAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACG 204939 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | ||| || || | ||| | || || ||||||||||| || Sbjct 204938 TTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTG 204879 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 204878 ACGAAGATCTGCAT 204865 >seq15 Length=603150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 242/363 (67%), Gaps = 17/363 (5%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||||||| |||| ||| |||||| | || || |||||||| || | ||||| ||| Sbjct 375995 ATGCCGGGCTTGACCTTCTCCAACGAGCTCATTTCACGCGACGAGGGTATGCACACCGAC 376054 Query 46974 TTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAAATTAAACT----CGGACACGA 47028 || || || || || || || || ||| | | |||| | | | || || Sbjct 376055 TTCGCCTGCCTGCTCTT-CA------GCATGATTCA-AAATAAGCCGTCTCCAGAGTCGG 376106 Query 47029 TCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGC 47088 | | ||| | | ||||| || |||||| || ||||| | || | || |||| Sbjct 376107 TGCGTGCCATCATCACCGAGGCTGTCTCCATCGAGAAAGAGTTCCTCACCGAAGCCCTGC 376166 Query 47089 CC-GTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCG 47147 | | ||||| ||| || ||||| ||| | ||||||| | || ||||||||||| || Sbjct 376167 CTTGCCGCCT-GCTCGGTATGAATGCAGACCTTATGTGCCAGTACATTGAGTTTGTAGCA 376225 Query 47148 GATCGTCTGTTGGTGCAGCTCGGACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGA 47206 || || || | || ||||| |||| ||| | | || || || ||||| || Sbjct 376226 GACCGCTTGCTCATGGCTCTCGG-CAACACAAAGGTGTACAACGCGACGAACCCGTTCGA 376284 Query 47207 GTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGA 47266 || ||| | ||||| ||||| | ||||| || ||||| |||||||| || || || || Sbjct 376285 CTTCATGGAGAACATCTCGCTGGCAGGCAAGACAAATTTCTTCGAGAAGCGCGTTGGCGA 376344 Query 47267 GTA 47269 || Sbjct 376345 CTA 376347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609013546120