Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 1e-15 >seq8 Length=997024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| | || || | ||| ||||| | || || ||||| ||||| |||| ||||||| Sbjct 377101 AGCTGCACGTTGAGCGCCTCGACGTGATCCAGATACACGTGTGCGTCGCCCATGGTGTGC 377042 Query 146968 A-CAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026 ||| || || || | ||| || |||||||| | ||||| || |||| || ||| Sbjct 377041 GTCAACGTGCCG-GGAATCAGGTCGCAGACGTGGGCGAGCATGTGCGTCAGCAACGCGTA 376983 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||| |||||||| || || || ||||||||||| | ||||| ||| ||||| ||| Sbjct 376982 CGAGGCGATGTTGAACGGCACGCCTAGGCCCATGTCGCACGACCGCTGATACAGGATGCA 376923 Query 147087 CGAGAGC-TCCCCGTCGGCCACG 147108 ||| ||||| |||||| || Sbjct 376922 GTGCAGCGTCCCCTTCGGCCGCG 376900 Score = 87.8 bits (96), Expect = 2e-12 Identities = 228/339 (67%), Gaps = 14/339 (4%) Strand=Plus/Minus Query 147124 ATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACC 147183 |||||||| || |||| ||||| |||||| ||||||||||| || | | Sbjct 376828 ATGTGGCAAGGTGGCAAGGCCATTTTCTTCAGGTCGGCGGGGTTCCACGCGCTCAGGATG 376769 Query 147184 AGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCAC 147242 | |||| | || | || || |||| | || ||||| || | ||||||||||| Sbjct 376768 ATGCGCC-GATCGTACGGCTTGTTCTTGAGCTTATCGATCACGTCCGCGAGCTGGTCCAC 376710 Query 147243 GCCCTGGCCCCCGTAGTTTGTCC-----CGCAGTCCACGTACCTGGCCCCAAAGTGCCTC 147297 ||||| ||||||| | ||| ||| ||| |||||| || || ||||| | | Sbjct 376709 ACCCTG--CCCCGTA--TAATCCGTATGCGC-GTCGACGTACTCCGCTCCGAAGTGACGC 376655 Query 147298 CACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGC 147357 |||||||| || || || || || |||||||| | ||||||| || | ||| || Sbjct 376654 CACTGGAAACCATATACGGGACCGAGGTCGCCCTCTTCTCTGTGCCCGA-GACCGTTGGC 376596 Query 147358 TT-GAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTC 147416 | ||| ||||| || ||| | | |||||||||| | |||| | |||||| Sbjct 376595 GTCGAGGAACTCTCGGCTCCCATTGCCGTCCCAGATCTTGATGCCCTGTTCTGAGAGCGG 376536 Query 147417 CTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 || ||| ||| ||||| ||||||||||||||||| Sbjct 376535 TTTCGAGGACGTCGAGCCTGCTATGAACCAGAGCAGCTC 376497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583485323248800