Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq15 150 3e-30 seq10 109 8e-18 >seq15 Length=603150 Score = 150 bits (166), Expect = 3e-30 Identities = 208/284 (73%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 1455785 ATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA 1455844 |||||| || ||||| ||| ||||| ||||| || |||||| |||| || | || Sbjct 375455 ATGTAC-AAGAAGGCAATGGCATCCTTCTGGACTGCAGAGGAGATCGATCTGTCCAAGGA 375513 Query 1455845 CACGGTCC--ACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCAAGCACGTC 1455899 || ||| ||||| || || | ||| ||||||||| |||||| |||| || Sbjct 375514 CAT--TCCTGACTGGAACAACCGTCTTAACGATGACGAGCGCTTCTTCATCTCGCACATC 375571 Query 1455900 CTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTAT 1455959 |||||||| || |||||| |||||||||||| ||||||||| | || ||||| | Sbjct 375572 CTCGCCTTCTT-CGCCGCGTCGGATGGCATCGTGAACGAGAACCTAGTCGAACGCTTCAG 375630 Query 1455960 GAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAA 1456019 ||| || || | ||||||||||| | || ||||| |||||||| ||||| || || Sbjct 375631 CGCAGAAGTACAGATTCCAGAGGCACGCTGCTTCTACGGCTTCCAGATTGCCATGGAGAA 375690 Query 1456020 CATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 ||| ||||| || || |||||||| || |||||||| ||| ||| Sbjct 375691 CATTCACTCCGAGACGTACTCGCTGCTTATCGACACGTACATCA 375734 Score = 129 bits (142), Expect = 8e-24 Identities = 234/331 (71%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACC 1456507 ||| ||||| ||||| ||||| ||||||| || ||| | || |||||||| | Sbjct 376040 GGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCATGATTCAAAATAAGCCGTCTCCA 376099 Query 1456508 GACGT--GCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 || || | | || |||||| |||||| ||| |||||||||||||| ||| || Sbjct 376100 GA-GTCGGTGCGTGCC-ATCATCACCGAGGCTGTCTCCATCGAGAAAGAGTTCCTCACCG 376157 Query 1456566 AGTCGCTGCCGGTGGCG-CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGA 1456624 | | ||||| || || || |||| ||||| | || || |||||||||||||||| Sbjct 376158 AAGCCCTGCC-TTGCCGCCTGCTCGGTATGAATG-CAGACCTTATGTGCCAGTACATTG- 376214 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 | ||||| || |||||| ||||| ||| |||||| | | ||| ||| || | Sbjct 376215 AGTTTGTAGCAGACCGCTTGCTCATGGCTCTCGGCAACACA-AAGGTGTACAACGCGACG 376273 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 ||||||||| | |||||| |||||||| | |||||||| || || |||||| Sbjct 376274 AACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAAGACAAATTTCTTCGAGAAG 376333 Query 1456745 CGCG-TGGCGAGTACGCCAAGGCCGGCGTCA 1456774 |||| |||||| ||| |||||||| |||| Sbjct 376334 CGCGTTGGCGACTACCAGAAGGCCGGTGTCA 376364 >seq10 Length=848763 Score = 109 bits (120), Expect = 8e-18 Identities = 204/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || ||||| ||||||| | ||| ||||| ||| | ||||| || |||||||| Sbjct 461312 ACTTACGACTACATGTCGAATAAGTACTTCACACACGCGTCTCCCACTCTGTTTAATGCT 461253 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||||||| |||||| || || ||||| || | || ||||||| || || Sbjct 461252 GGCACGCCGTCGCCGCAGCTCTCCTCCTGCTTCCTCATCGATATGAAGGAGGACAGCATA 461193 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 ||||||||||| |||||||||||| || || | || || ||| | ||||| |||||| Sbjct 461192 GAGGGCATCTACGACACGCTCAAGACCTGTGCTATGATTTCAAAGACTGCCGGTGGCATC 461133 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| | || |||| | || || | || | ||| | | || ||||||||| Sbjct 461132 GGTCTGAACGTACACCGCATTCGTGCGACTGGTTCGTACATTGGTGGTACCAACGGCACA 461073 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| || | || ||| | || || | | | ||| || || || || || ||| Sbjct 461072 TCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGCCACCGCTCGATATGTTGATCAG 461013 Score = 91.5 bits (100), Expect = 2e-12 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 ||||||| | |||||||| || |||||||||| |||||| || || | || || |||| Sbjct 460105 AGCATGGTGTCCGCAACTCCTTACTCGTGGCGCCCATGCCAACCGCTTCAACTTCTCAGA 460046 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTG 263031 ||||||| |||| |||| ||||| | ||| || ||||||||| | || |||||| Sbjct 460045 TCCTGGGTAACAACGAGTGCTTCGA-GCCATATACCTCAAACATCTACTCACGTCGCGTG 459987 Query 263032 CTCTCGGGCGACTT 263045 ||| | ||||| || Sbjct 459986 CTCGCCGGCGAGTT 459973 Score = 87.8 bits (96), Expect = 3e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| |||||| | ||| || | |||||| |||| |||| |||| ||||||||||| Sbjct 460709 TGGTATGCCATTCTTCAGGCACAGACCGAGACTGGCAATCCCTTCATGCTCTACAAGGAC 460650 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215 || ||||| | ||||||||| | |||||||| |||| | ||| ||||||| || Sbjct 460649 GCTTGCAACCGCAAGAGCAACCAGAAAAACCTGGGAACCATCCGCAG-CTCCAACCTTTG 460591 Query 262216 CACCGAGATC 262225 |||||||||| Sbjct 460590 CACCGAGATC 460581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177775802175454