Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq23 116 4e-21
seq10 109 6e-19
seq2 89.7 5e-13
>seq23
Length=461238
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| || | ||| || | ||| | ||| || || || |||||||||||||||||||| | |
Sbjct 205319 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 205260
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| || || || || || || || || || || || ||||| ||||||||||| || ||
Sbjct 205259 AGCG-TGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGG 205201
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| || || || |||||||| || || || ||| | ||||| || ||||| ||
Sbjct 205200 AATACCCTCCTTGTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAAC 205141
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || || || || | || || ||||||||||||||
Sbjct 205140 TTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | ||| ||||| || || || ||||||||||| ||||||||
Sbjct 205091 CCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 205032
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || ||||||||||| || || || |||| |||||||| || || ||
Sbjct 205031 AGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGG 204972
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || |||||||| ||||| || | || || || || || ||
Sbjct 204971 ATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACC 204912
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| || || || | ||| || ||||| || |||||
Sbjct 204911 TCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865
Score = 93.3 bits (102), Expect = 4e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585
|| ||||||||||||||| | ||| | ||| ||||||||||| || || || |||
Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591
Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645
| |||||||| || || || ||||| || || || ||||| || || || |||
Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531
Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
| ||||||||||| || || ||||| || ||||| || || ||
Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 204487
>seq10
Length=848763
Score = 109 bits (120), Expect = 6e-19
Identities = 344/527 (65%), Gaps = 7/527 (1%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| |||||| | |||| || ||||| ||||| ||||| ||||||||||| ||| |
Sbjct 461375 CAGCACATGATTATGCGTGTTGCGGTTGGCATACACGGTGAAGACATTGAGAGTGCCATT 461316
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| || ||| | ||||| || | || || ||||| || ||||| |||||
Sbjct 461315 GAGACTTACGACTACATGTCGAATAAGTACTTCACACACGCGTCTCCCACTCTGTTTAAT 461256
Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743
|| ||||| |||| || | ||||| || || | | ||| || ||||||
Sbjct 461255 GCTGGCACGCCGTCGCCGCAGCTCTCCTCCTGCTTCCTCATCGATATGAAGGAGGACAGC 461196
Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATAC-GGCGGCG 7801
|| || ||||| ||| ||||||| | || || || | |||| |||| || | ||| |
Sbjct 461195 ATAGAGGGCATCTACGACACGCT-CAAGACCTGTGCTATGATTT-CAAAGACTGCCGGTG 461138
Query 7802 GAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACG 7861
| || |||||||||||| || | | || || | ||| ||| | |||||||
Sbjct 461137 GCATCGGTCTGAACGTACACCGCATTCGTGCGACTGGTTCGTACATTGGTGGTACCAACG 461078
Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921
| | | ||| |||| || || |||||||| || | | || | | | ||| |||| |
Sbjct 461077 GCACATCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGCCACCGCTCGATATGTTG 461018
Query 7922 ACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978
| ||||| || |||||| || || ||||| || | ||||| ||||| || |
Sbjct 461017 ATCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCATGGCATGCTG 460958
Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCG 8038
|||||| | ||| | |||| ||| ||| ||||| | | || || |
Sbjct 460957 ACATTTTTGGCTGGCTTGACTTGCGCAAGAACCACGGTAAGGAAGAGAACCGTGCTCGTG 460898
Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTT 8085
|||| |||| | |||||| ||| |||||||| |||| || |||
Sbjct 460897 ATCTCTTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTT 460851
>seq2
Length=1312579
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || ||||||||||||| | |||| | || || ||||| ||||| ||||| |
Sbjct 554488 CCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGA 554547
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
|||| |||||||| || || || || || ||||| || || || || || || ||
Sbjct 554548 TCAAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTCACATTGT 554607
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | || || ||||| ||||| || || || || || || || || | || || ||||
Sbjct 554608 CGATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 554667
Query 134704 AAATTTGCATTT 134715
| | || ||||
Sbjct 554668 AGCTATGAATTT 554679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505396081484840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |