Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq23 116 4e-21 seq10 109 6e-19 seq2 89.7 5e-13 >seq23 Length=461238 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| || | ||| | ||| || || || |||||||||||||||||||| | | Sbjct 205319 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 205260 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || || || || || || || || || || ||||| ||||||||||| || || Sbjct 205259 AGCG-TGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGG 205201 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || |||||||| || || || ||| | ||||| || ||||| || Sbjct 205200 AATACCCTCCTTGTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAAC 205141 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || |||||||||||||| Sbjct 205140 TTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||| ||||| || || || ||||||||||| |||||||| Sbjct 205091 CCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 205032 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || ||||||||||| || || || |||| |||||||| || || || Sbjct 205031 AGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGG 204972 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || |||||||| ||||| || | || || || || || || Sbjct 204971 ATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACC 204912 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | ||| || ||||| || ||||| Sbjct 204911 TCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585 || ||||||||||||||| | ||| | ||| ||||||||||| || || || ||| Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 | |||||||| || || || ||||| || || || ||||| || || || ||| Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | ||||||||||| || || ||||| || ||||| || || || Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 204487 >seq10 Length=848763 Score = 109 bits (120), Expect = 6e-19 Identities = 344/527 (65%), Gaps = 7/527 (1%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | |||| || ||||| ||||| ||||| ||||||||||| ||| | Sbjct 461375 CAGCACATGATTATGCGTGTTGCGGTTGGCATACACGGTGAAGACATTGAGAGTGCCATT 461316 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||| || | || || ||||| || ||||| ||||| Sbjct 461315 GAGACTTACGACTACATGTCGAATAAGTACTTCACACACGCGTCTCCCACTCTGTTTAAT 461256 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || ||||| |||| || | ||||| || || | | ||| || |||||| Sbjct 461255 GCTGGCACGCCGTCGCCGCAGCTCTCCTCCTGCTTCCTCATCGATATGAAGGAGGACAGC 461196 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATAC-GGCGGCG 7801 || || ||||| ||| ||||||| | || || || | |||| |||| || | ||| | Sbjct 461195 ATAGAGGGCATCTACGACACGCT-CAAGACCTGTGCTATGATTT-CAAAGACTGCCGGTG 461138 Query 7802 GAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACG 7861 | || |||||||||||| || | | || || | ||| ||| | ||||||| Sbjct 461137 GCATCGGTCTGAACGTACACCGCATTCGTGCGACTGGTTCGTACATTGGTGGTACCAACG 461078 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | | ||| |||| || || |||||||| || | | || | | | ||| |||| | Sbjct 461077 GCACATCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGCCACCGCTCGATATGTTG 461018 Query 7922 ACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 | ||||| || |||||| || || ||||| || | ||||| ||||| || | Sbjct 461017 ATCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCATGGCATGCTG 460958 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCG 8038 |||||| | ||| | |||| ||| ||| ||||| | | || || | Sbjct 460957 ACATTTTTGGCTGGCTTGACTTGCGCAAGAACCACGGTAAGGAAGAGAACCGTGCTCGTG 460898 Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTT 8085 |||| |||| | |||||| ||| |||||||| |||| || ||| Sbjct 460897 ATCTCTTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTT 460851 >seq2 Length=1312579 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||||| | |||| | || || ||||| ||||| ||||| | Sbjct 554488 CCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGA 554547 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| || || || || || ||||| || || || || || || || Sbjct 554548 TCAAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTCACATTGT 554607 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | || || ||||| ||||| || || || || || || || || | || || |||| Sbjct 554608 CGATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 554667 Query 134704 AAATTTGCATTT 134715 | | || |||| Sbjct 554668 AGCTATGAATTT 554679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396081484840