Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10 179 5e-40 >seq10 Length=848763 Score = 179 bits (198), Expect = 5e-40 Identities = 1291/2063 (63%), Gaps = 43/2063 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || ||||| ||||| | || || | | |||||| ||||||||||| || || || ||| Sbjct 459622 GTGAACTGGATGGGAGCAGAGGCAGCCTGTGTACGCAGATAGTACATGCCAGTCTTGAGA 459681 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || || |||| || ||||||||| || | ||| |||| || || Sbjct 459682 CCGAGCTTCCAGCCAGCGAAATGCATGGAGGTGATCTTGCCCATCGTTGGTTCCTTCATG 459741 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || || | || || ||| || ||||| || || | ||| || ||||| | || Sbjct 459742 TGGATGTTGAGAGACTGGGATTGGTCAATGAACGCGCCACGATCGGCGGCCATCTGGATG 459801 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 | | ||| |||||||| | ||||| | | ||| ||||||||||||| | Sbjct 459802 ACATGGCGTTGGCTTATTTCCCAGACCGTCTTGTACAATGCTTTAATATCATCTGGAATG 459861 Query 68614 CTCGTATTT---TGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | | ||||| || ||||| || | || || ||||| || | ||| | Sbjct 459862 TTTGGAATGCGCTGAATCGAACCACCCTCCGCAATGATGCGGTTCTTCATATTGTCAGAC 459921 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 ||||| | || | | || | || | ||||| || | || || || || Sbjct 459922 CACAAACCCATGTCAACGAGATCTTTGAGCAACCAAGGATTGACGACCTGGAACTCGCCG 459981 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | | ||| | ||| | ||| || || ||||||||| || | | || || || ||| Sbjct 459982 GCGAGCACGCGACGTGAGTAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTACCC 460041 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 || || |||| |||||| || |||||||| || ||||| | ||| || | | |||| Sbjct 460042 AGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCACGAGTAAGGAGTTGCGGACACCA 460101 Query 68851 TGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTC 68910 || || |||| | | |||| || | ||| ||||| ||||||| ||| || ||| Sbjct 460102 TGCTTTTTGATCTCAGCTTTGAGGCTGTCCCAGTCCCAGAGATCAGTTGGAGTCACGTTC 460161 Query 68911 CAAAGATCGTATTGTAGAATTCCGTT----ACTTGCATATGATCCATTATATGTTTCATA 68966 || | || || || | ||| || | || || || || | ||| | ||| Sbjct 460162 CACATGTCATACTGCAAAATCCCCTGGGACACGGGC----GAGCCCTCATAACTCGAATA 460217 Query 68967 AGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026 || |||| || || || || ||||| || | || ||| || || ||||| Sbjct 460218 GGGACCTTGCTCTTTGGCAAGCTCACACGAAGCTGTCAGAGCGGCGTGGTATATGGTTTC 460277 Query 69027 GAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAAT 69086 || || | | || || | || ||| || |||||||| | | | | Sbjct 460278 AAAGATTTGGATGTTCAGCATACGAGCCTCTGGAGAGTCGAATGGCAGCCGCAGAGCGAG 460337 Query 69087 AAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146 || ||||| || | ||||| || || | ||||||||| | |||||| | || ||| Sbjct 460338 GAAAGCATCGGCAAGACCCTGCACACCGACACCGATAGGACGGTGTCTCATGTT---ACT 460394 Query 69147 TTCA---GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203 | | || ||||| | ||| || | ||||| || || || || || | || || || Sbjct 460395 GTTACGTGCCTCTGGTACAGGGTAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCGAAC 460454 Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAACAA--AC 69261 || || || | || || || || || ||| || ||| || Sbjct 460455 GACATGGCGGGTGACCTCATGCAGCTTCTTGAAGTCGTATTCGCCACGCATGACATCGAC 460514 Query 69262 ATA--TT--CAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATA 69317 | | || ||| || | ||| || | ||||| || || ||||| | | | || Sbjct 460515 AAAGGTTGGCAGAGCCAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTA 460574 Query 69318 TTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACT 69377 | || ||||| || || || || | ||| || ||||| |||| ||| || || Sbjct 460575 CTCAATGATCTCGGTGCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCT 460634 Query 69378 CTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 69437 ||| ||| || ||||||||||| || || || ||| | ||||| || |||| | | Sbjct 460635 CTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTG 460694 Query 69438 GATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTT 69494 | ||| | | ||| | | |||| || ||||| || | ||| || Sbjct 460695 AAGAATGGCATACCACAGCTTCTGAGCACGGAT---GGTCTCACGACCACGGCCCTCCTT 460751 Query 69495 TTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 || |||| ||||| ||| || || || || || | ||||| | | ||||| Sbjct 460752 CTCGTATTTCTCGTATAGGGCC--TCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGT 460809 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 |||||| ||||| | | || ||||| | ||| | | |||||||||||| || ||| Sbjct 460810 GCTTCATTGGGACAGAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGA 460869 Query 69613 TCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAt 69670 || || |||| | ||| ||| |||||||| | | | || ||||| || || || | Sbjct 460870 TCAGGCGTCCACAAAGC-ATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTT 460928 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 || ||| || || | | | ||| |||| ||||||||| || || || || || | Sbjct 460929 CTTGCGCAAG-TCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGA 460987 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 | || || || || || || |||||||| | |||| || ||| || ||||| | Sbjct 460988 AAGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCGAGCGGTGGCATCGTAGACAC 461047 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 || ||| ||||| | ||| || ||| | || || || ||| ||| || || | | Sbjct 461048 GCAACATAGGAATTAGACCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACCAGTCG 461107 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | ||||| | ||||| || || || || | || || || | |||||| Sbjct 461108 CACGAATGCGGTGTACGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGG 461167 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGC 69970 || | ||||| || || ||||||||||| || || |||| | | || || ||| Sbjct 461168 TCTTGAGCGTGTCGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGG 461227 Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 || | || | || || |||||||| | || ||||| ||||| ||||| Sbjct 461228 AGGAGAGCTGCGGCGACGGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGT 461287 Query 70031 A-TTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAAT 70088 | || ||| | | || | ||| || ||||| || || || || ||| | || || Sbjct 461288 ACTTATTCGACATGTAG-TCGTAAGTCTCAATGGCACTCTCAATGTCTTCACCG-TGTAT 461345 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 || | ||| |||||||| | ||| ||||| |||| ||| || || ||| ||| Sbjct 461346 GCCAACCGCAACACGCATAATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCG 461405 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 | ||||| || | |||| ||||| || |||||||| | ||| ||||| | || Sbjct 461406 GAGAAGGTAGGACCTCTCCAATGTTTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTC 461465 Query 70209 GTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATA-ACAGTAG 70267 ||||| || | || || || | ||| | || | | |||| |||| ||| Sbjct 461466 GTAAACGATGGCCGAGTTCAGCTCGTCCGCGTGCTTCATGATGATAT-CATACGTAGTCT 461524 Query 70268 GTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCA 70327 ||||| || || | | || || ||||| || || ||||||||| | | ||| || | Sbjct 461525 TCGAGATCATAGGGCAGTGCTTGCCGTTTTTTGGGTTGACATAGTTGTAGAGATCATCGA 461584 Query 70328 TTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTG 70387 | || | |||| | ||||| |||| |||||| | || |||| |||||| | || | Sbjct 461585 TGACTGCCGAAAATTGCTTTTTAGTTTGCTTGTGAAGGTTCGATACGGCTATACGTGCAG 461644 Query 70388 CTAGAATAGCATAGTCAGGATGT 70410 | || | ||| ||||| |||||| Sbjct 461645 CGAGCACAGCGTAGTCTGGATGT 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905648805880