Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq23 105 6e-18 seq10 95.1 1e-14 >seq23 Length=461238 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || |||||||| |||||||| || |||| | || || Sbjct 205301 ACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCCTCC 205242 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || ||||| ||| | || | ||||| ||||| || || | |||||| || || Sbjct 205241 AGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGA 205182 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | |||| | || | ||||||| || |||||||||||| || || | || Sbjct 205181 ATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTCTTT 205122 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || ||||| || ||||||||| || Sbjct 205121 CCTGTGAGCGTCTTCACGAAAATTTGCATACCT 205089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||||||||||||||| || | || | ||||||||||||||||| Sbjct 205061 GTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCA 205002 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| || || || || | ||||| || || || ||| | || Sbjct 205001 GCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTG 204942 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | || || || || || || | || || |||||||| Sbjct 204941 ACGTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTC 204882 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 204881 TTGACGAAGATCTGCATA 204864 >seq10 Length=848763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 276/422 (65%), Gaps = 5/422 (1%) Strand=Plus/Plus Query 131613 TGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCA 131672 ||||||| | || | ||||| || |||||||||||||| ||||| |||| ||| ||| Sbjct 460817 TGGGACAGAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCG 460876 Query 131673 CCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCA 131732 ||| || || || || ||||| | ||| |||||||| |||| | || || Sbjct 460877 TCCACAAAGCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCA 460936 Query 131733 AATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTT 131792 | | | || | |||||||| |||||||| || || | || | || | || || Sbjct 460937 AGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGG 460996 Query 131793 TGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGG 131849 |||| || || || |||| ||||| ||| | || | ||| || |||||||| | Sbjct 460997 GGCGCTTGTTGCCACCCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAG 461056 Query 131850 GCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTT 131909 | | |||||||| | || ||||| | |||||| ||| | || | || Sbjct 461057 GAATTAGACCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGC 461116 Query 131910 TGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGA 131968 ||| ||||| || || || || || || || ||| || || | || || | | || Sbjct 461117 GGTGTACGTTCAGACCGATGCCACCGGCAGTCTTT-GAAATCATAGCACAGGTCTTGAGC 461175 Query 131969 GTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAAC 132028 |||| ||||| || || | ||||||| | || |||| | ||||| ||||| | | Sbjct 461176 GTGTCGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGC 461235 Query 132029 TG 132030 || Sbjct 461236 TG 461237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932499348104