Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10 291 1e-73 seq15 118 1e-21 >seq10 Length=848763 Score = 291 bits (322), Expect = 1e-73 Identities = 1176/1823 (65%), Gaps = 51/1823 (3%) Strand=Plus/Plus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 |||| || || ||||||||||| || |||||||| || | ||||| | | |||| Sbjct 459646 GCCTGTGTACGCAGATAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGC 459705 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473 || || | || |||| ||||||||| | |||| || ||| | | || |||| Sbjct 459706 ATGGAGGTGATCTTGCCCATCGTTGGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGG 459765 Query 110474 TCAATGAAGCGCCCC-CGTTGTGCCGCCATATCAATGACATC-CTTCATCTTAATTTCCC 110531 |||||||| ||| || || | || ||||| | ||||||| | | |||| |||||| Sbjct 459766 TCAATGAA-CGCGCCACGATCGGCGGCCATCTGGATGACATGGCGTTGGCTTA-TTTCCC 459823 Query 110532 AAACTGTGCGATAGAGATTCTTGA-TATCATCTGGGATATCTGAGATATTCTGGATGGAA 110590 | || || || | || ||| | |||||||||| || | || || ||| || ||| Sbjct 459824 AGACCGTCTTGTACA-ATGCTTTAATATCATCTGGAATGTTTGGAATGCGCTGAATCGAA 459882 Query 110591 CCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGG 110650 || ||| || | ||| | | |||||||| | ||||| | ||| || | ||| Sbjct 459883 CCACCCTCCGCAATGATGCGGTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGA 459942 Query 110651 TCATTGA----CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAG 110706 || |||| | | | | ||| ||| || |||| || ||||| | | Sbjct 459943 TCTTTGAGCAACCAAG-GATTGACGACCTGGA---ACTCGCCGGCGAGCACGCGACGTGA 459998 Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||||| || ||||| || ||||| || || ||||||| ||| || | || || Sbjct 459999 GTAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGA 460058 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 || |||||||| || |||| | || || ||| || | ||| | || ||||| Sbjct 460059 AGCGGTTGGCATGGGCGCCACGAGTAAGGA--GTTGCGGACACCATGCTTTTTGATCTCA 460116 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACT 110882 | ||||| |||||||| || || | |||| |||| |||| |||||||| ||| Sbjct 460117 GCTTTGAGGCTGTCCCAGTCCCAGA-GATCAGTTGGAGTCACGTTCC-ACATGTCATACT 460174 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | | | ||| |||||| |||| || |||||| | | ||||| |||||| ||| | Sbjct 460175 GCAAAATCCCCTGGGACACGGGCGAGCCCTCATAACTCGAATAGGGACCTTGCTCTTTGG 460234 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 | | ||||| || ||| | ||||| || |||||||||||||| | |||| Sbjct 460235 CAAGCTCACACGAAGCTGTCAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCA 460294 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGA 111061 | || || || || |||| | ||| ||| | | || |||| || ||| Sbjct 460295 GCATACGAGCCTCTGGAGAGTCGAATG-GCAGCCGCAGAGCGAGGAAAGCATCGGCAAGA 460353 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-AC 111120 || || ||||| | ||| ||||| | ||||| ||| ||| || || || ||| || Sbjct 460354 CCCTGCACACCGACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGCC-TCTGGTAC 460412 Query 111121 GGGATAAAAATTTCTGTCAATGA-CTCGGTTTAGATTTTTGGTAACAATCTTT---GTGA 111176 || || || |||| |||| || | | || ||| ||| | | |||| Sbjct 460413 AGGGTAGTGGTTAATGTCGATGATCTTGTTCAAG----TTGCGAACGACATGGCGGGTGA 460468 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236 ||||| || || | | || | || | | ||| |||| | |||| || | Sbjct 460469 CCTCATGCAGCTTCTTGAAGTCGTATTCGCCACGCATGACATCGACAAAGGTTGGCAGAG 460528 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | | || ||||| || || || || ||| || | |||||||| | || || | Sbjct 460529 CCAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGG 460588 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || | |||||| || || || |||| || || ||||| ||||| |||||| | Sbjct 460589 TGCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAG 460648 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 | ||||||||||||||| |||| | || ||||| ||||||| | ||||| || | || Sbjct 460649 CGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACC 460708 Query 111417 AAA-CATCGG----CGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGT 111471 | | | || | ||| |||| | | | | || |||||| |||||| || Sbjct 460709 ACAGCTTCTGAGCACGGATGGTCTCACGAC-----CACGGCCCTCCTTCTCGTATTTCTC 460763 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 ||| ||||| |||||||| || || | |||| ||| || ||||| | | ||||| Sbjct 460764 GTATAGGGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACA 460823 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 ||| || | ||| |||| | ||||| || |||||||| || || || |||||| Sbjct 460824 GAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAA 460883 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | | |||||||| | | || |||||| | ||| ||||| || || ||||| Sbjct 460884 AGCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAG 460943 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTC 111707 | | | || || || |||||||||||||| || | |||| || || | | Sbjct 460944 CCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTT 461003 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | | ||| | |||| ||||| || || ||||| | | || || | ||| ||||| | Sbjct 461004 GTTG-CCACCCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTA 461062 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 111827 ||| | ||| || || || || | ||| || | | || | | || | Sbjct 461063 GACCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTA 461122 Query 111828 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 111887 || || || || || || || |||||| || ||||| | | || || | | Sbjct 461123 CGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGT 461182 Query 111888 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 111947 |||| || | || ||||||||| | |||| |||||||| ||| | |||||| Sbjct 461183 AGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCG 461242 Query 111948 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATC 112006 || || |||||||| || || || || | ||||| |||| ||| | | ||||| Sbjct 461243 ACGGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAA-GTACTTATTCGACATG 461301 Query 112007 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGC 112066 | |||||| ||||| | | || ||||||||||| ||||| ||||| | || || ||| Sbjct 461302 TAGTCGTAAGTCTCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCGCAACACGC 461361 Query 112067 ATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTC 112126 || | ||||| |||||| | || | |||||| || || |||| ||| | || Sbjct 461362 ATAATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTC 461421 Query 112127 TCAAGGGTTTTGAGACCAAAGTA 112149 || | ||||||| ||||| || Sbjct 461422 TCCAATGTTTTGAAGCCAAAATA 461444 >seq15 Length=603150 Score = 118 bits (130), Expect = 1e-21 Identities = 300/453 (66%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || || |||||||| ||||| || ||||| || | || ||||| ||||| Sbjct 376347 TAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTCCATG 376288 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA----TGGGTGGCACCCCAACTTGTTTGAGGAG 122486 ||||| || || ||| ||||||| | | || || || | | |||| | Sbjct 376287 AAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGC----CGAGAGCCATGAGCAA 376232 Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 || || | ||| |||||||||||| | |||| || | |||||||||| ||| Sbjct 376231 GCGGTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATTCATACCGAGCAGGCG 376172 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 || || || || || || |||| ||||||| || || ||||| | | |||||| Sbjct 376171 GCAAGGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGATGATGGC 376112 Query 122607 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 | | | || | || || |||| | | | |||||||| ||| || || Sbjct 376111 ACGCACCGACTCTGGAGACGGCTTATTTTGAATCATGCTGAAGAGCAGGCAGGCGAAGTC 376052 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 ||| | |||||| || || ||||| || || || |||||| | || |||||||| Sbjct 376051 GGTGTGCATACCCTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAGCCCGGCATGAG 375992 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 ||| |||||||| | ||| | || | ||| || | || ||||||||||| ||||||| Sbjct 375991 ACCTCGCTTCTTAAGCCAGAAGATGGAAGCA-AAGGCACCAGAGAAGAAGATGCCCTCCA 375933 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 | || || || | |||||| |||||||| Sbjct 375932 CGGCAGCGAAGGCGATGAGGCGTGAGGCGAAGG 375900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029118903200