Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10 262 5e-65 seq15 125 9e-24 >seq10 Length=848763 Score = 262 bits (290), Expect = 5e-65 Identities = 1174/1825 (64%), Gaps = 55/1825 (3%) Strand=Plus/Plus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 |||| || || || |||||||| || |||||||| || |||||||| || | |||| Sbjct 459646 GCCTGTGTACGCAGATAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGC 459705 Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947 || |||| | |||| | ||||| | |||| || ||| | | |||||||| Sbjct 459706 ATGGAGGTGATCTTGCCCATCGTTGGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGG 459765 Query 117948 TCGATGAA-GCGTCCCCGATCCGCCGCCATATCAATCACATC-CTTCATCTTGATTTCCC 118005 || ||||| ||| || ||||| || ||||| | || |||| | | ||| ||||||| Sbjct 459766 TCAATGAACGCG-CCACGATCGGCGGCCATCTGGATGACATGGCGTTGGCTT-ATTTCCC 459823 Query 118006 ACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATC 118065 | || ||| |||| | |||||||||||||| || | || || || || | Sbjct 459824 AGACCGTCTTGTACAATGCTTTAATATCATCTGGAATGTTTGGAATGCGCTGAATCGAAC 459883 Query 118066 CACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGAT 118125 ||||| || | ||| | | |||||||| | ||||| | ||| || | ||||| Sbjct 459884 CACCCTCCGCAATGATGCGGTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGAT 459943 Query 118126 CCT----CCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAG 118180 | | | || | | | |||||| || ||||| || ||||| ||| | | || Sbjct 459944 CTTTGAGCAACCA-AGG---ATTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAG 459999 Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||||| || | || |||||||| |||||||| |||||||||| ||| || | || || Sbjct 460000 -TAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGA 460058 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC---CTTTTCCCTAATGCG 118297 || || |||||||| |||| ||| | | ||| |||| ||| ||||| | || Sbjct 460059 AGCGGTTGGCATGGGCGCCACGAGTAAGGAGTTGCGGACACCATGCTTTT---TGATCTC 460115 Query 118298 TTCCTTGAGAGCGTCCCAGTCGTAGTTGAGC-TTTGTCTCCCCCTGCCACATATCAAACT 118356 | ||||| ||||||||| || || | ||| | | | |||||| ||| ||| Sbjct 460116 AGCTTTGAGGCTGTCCCAGTCCCAG-AGATCAGTTGGAGTCACGTTCCACATGTCATACT 460174 Query 118357 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 | | || || |||||| | ||||| |||||| | || ||| || || | | | | Sbjct 460175 GCAAAATCCCCTGGGACACGGGCGAGCCCTCATAACTCGAATAGGGACCTTGCTCTTTGG 460234 Query 118417 CCA----ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCA 118472 | | | || |||| | || || ||||| || || |||||||| || | Sbjct 460235 CAAGCTCACACGAAGCTGTC----AGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATG 460290 Query 118473 TTCATTGCCT--TGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCC 118529 |||| || | ||||| || || || | || | ||| | | || |||| Sbjct 460291 TTCA--GCATACGAGCCTCTGGAGAGTCGAATGGCAG-CCGCAGAGCGAGGAAAGCATCG 460347 Query 118530 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTC 118589 || ||||| || ||||||| || || || || |||||||| ||| || || || || Sbjct 460348 GCAAGACCCTGCACACCGACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGC-CTC 460406 Query 118590 T-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 118648 | || || || || | ||||| | | | || | || |||| || Sbjct 460407 TGGTACAGGGTAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCGAACGACATGGCGGGT 460466 Query 118649 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 118708 || ||||| ||||| | | | || | || | | ||| |||| | | || || Sbjct 460467 GACCTCATGCAGCTTCTTGAAGTCGTATTCGCCACGCATGACATCGACAAAGGTTGGCAG 460526 Query 118709 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 118768 || | || |||| |||||||| | | ||| || |||||||||| || || || Sbjct 460527 AGCCAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTC 460586 Query 118769 CGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 118828 ||||| | ||| || || ||||| |||| ||| || || || ||| ||| || Sbjct 460587 GGTGCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCA 460646 Query 118829 CGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 118888 || |||||||| |||||| | || | || ||||| || || | || ||||| || | Sbjct 460647 AGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATA 460706 Query 118889 CCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGT 118947 ||| | | || | ||| | | || | | || ||||| | |||||| || || Sbjct 460707 CCACAGCTTCTG-AGCACGGATGGTCTCACGACCACGGCCCTCCTTCTCGTATTTCTCGT 460765 Query 118948 AGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGA 119007 | ||||| ||||||||||| || | | || | ||| || ||||| | || || |||| Sbjct 460766 ATAGGGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGA 460825 Query 119008 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 119067 |||| | ||| |||| || ||||| || |||||||| || || || |||| | | Sbjct 460826 AGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAG 460885 Query 119068 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 | |||||||||| ||| || ||||| | || || || ||||| || | Sbjct 460886 CATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCC 460945 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTAC 119181 || | | || || || ||||| || || ||||| | |||| | || | ||| Sbjct 460946 AGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTT-- 461003 Query 119182 GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241 | | ||| |||| | ||||| | || ||||| | | ||||| | ||| ||||| | Sbjct 461004 GTTG-CCACCCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTA 461062 Query 119242 TACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTG 119299 ||| | |||| ||| || || || | || ||||| || | | || | | ||| Sbjct 461063 GACCGTTGGATGTGCCGTTGGTACCACCAATGTACGA-AC-CAGTCGCACGAATGCGGTG 461120 Query 119300 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 119359 | || || ||| || || || || |||||| || || || | |||| || | Sbjct 461121 TACGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTC 461180 Query 119360 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGG 119419 |||||| || || || ||| |||| | |||||||||||||| || | || || Sbjct 461181 GTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGG 461240 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACA 119478 | || || ||||| || || ||||| || | |||||| |||| ||| | | |||| Sbjct 461241 CGACGGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAA-GTACTTATTCGACA 461299 Query 119479 TCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 119538 | | |||||| ||||| | | | ||||||||| ||||| || || | || || | Sbjct 461300 TGTAGTCGTAAGTCTCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCGCAACAC 461359 Query 119539 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCT 119598 |||||| ||||| || ||| | || || | |||| || | | ||||| | Sbjct 461360 GCATAATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACC 461419 Query 119599 TCTCCAAGGTCTTGAGACCAAAATA 119623 ||||||| || |||| |||||||| Sbjct 461420 TCTCCAATGTTTTGAAGCCAAAATA 461444 >seq15 Length=603150 Score = 125 bits (138), Expect = 9e-24 Identities = 290/437 (66%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| |||||||||||||| |||||||| || ||| ||| |||||||| Sbjct 376347 TAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTCCATG 376288 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 || || || |||||| | | ||| | | || || | |||| | || Sbjct 376287 AAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGCCGAGAGCCATGAGCAAGCGG 376228 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | || |||||||||||| |||| || | |||||||||| ||| || Sbjct 376227 TCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATTCATACCGAGCAGGCGGCAA 376168 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 || || || || || |||| | ||||| ||| ||||| || | |||||| | Sbjct 376167 GGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGATGATGGCACGC 376108 Query 129968 ATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGG 130027 | | ||| | || |||| | | | ||||||| ||| || || | Sbjct 376107 ACCGACTCTGGAGACGGCTTATTTTGAATCATGCTGAAGAGCAGGCAGGCGAAGTCGGTG 376048 Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || | ||||||||| || || ||||| || || |||||| || || ||||||||||| Sbjct 376047 TGCATACCCTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAGCCCGGCATGAGACCT 375988 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 |||||||| | |||||| || | | ||| | |||||||||||||| |||||||| Sbjct 375987 CGCTTCTTAAGCCAGAAGATGGAAGCAAAGGCACCAGAGAAGAAGATGCCCTCCACGGCA 375928 Query 130148 GCGAACGCAAAGAGACG 130164 ||||| || | ||| || Sbjct 375927 GCGAAGGCGATGAGGCG 375911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432362928520