Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10 286 4e-72 seq15 118 1e-21 seq29 86.0 7e-12 >seq10 Length=848763 Score = 286 bits (316), Expect = 4e-72 Identities = 1172/1811 (65%), Gaps = 45/1811 (2%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGTGTCTTGATG 104215 |||||||| ||||||| | |||| | ||| |||| || || |||| || Sbjct 461444 TATTTTGGCTTCAAAACATTGGAGAGGTCCTACCTTCTCCGAATCAATGGCAAGGTGGCA 461385 Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 || | |||||| ||||| | ||||| || || | || || || || ||||||||||| Sbjct 461384 GAGAGACCACAGCACATGATTATGCGTGTTGCGGTTGGCATACACGGTGAAGACATTGAG 461325 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 104334 || | | ||||| |||||| | ||||| | | ||| |||| ||||| | || || Sbjct 461324 AGTGCCATTGAGACTTACGACTACATGTCGAATAAGTAC-TTCACACACGCGTCTCCCAC 461266 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 || || |||||||| || || || || | ||| |||||||| |||| | || Sbjct 461265 TCTGTTTAATGCTGGCACGCCGTCGCCGCAGCTCTCCTCCTGCTTCCTCATCGATATGAA 461206 Query 104395 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 104454 ||||||| || | || ||||| | || || | | ||||| || |||||| Sbjct 461205 GGAGGACAGCATAGAGGGCATCTACGACACGCTCAAGACCTGTGCTATGATTTCAAAGAC 461146 Query 104455 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 104514 || || || || || || || | || | | || | | || ||| | || Sbjct 461145 TGCCGGTGGCATCGGTCTGAACGTACACCGCATTCGTGCGACTGGTTCGTACATTGGTGG 461086 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || || ||| | ||| | ||||| ||| | || || | | ||||| || || Sbjct 461085 TACCAACGGCACATCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGCCACCGCTCG 461026 Query 104575 CTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCAT 104630 ||||| |||| | ||| | | | | || || |||| | || |||||||||| Sbjct 461025 ATATGTTGATCAGGGTGG-CAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCAT 460967 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 |||| || || || | | | ||||| ||||| ||||| ||| | || || | | Sbjct 460966 GGCATGCTGACATTTTTGGCTGGCTTGACTTGCGCAAGAACCACGGTAAGGAAGA-GAAC 460908 Query 104691 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 |||| || |||||||||| ||| | |||| || ||||| |||||||| ||||||| Sbjct 460907 CGTGCTCGTGATCTCTTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTTGAA 460848 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| ||| | ||| | ||||| ||||| | | |||||||| ||| |||||| | Sbjct 460847 CAGAATGGTATGTGGACACTCTTCTGTCCCAATGAAGCACCTGGCCTCGCCGATGTCTAC 460788 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 || || |||||||| ||||| ||| || |||||| | || || || | || ||| Sbjct 460787 GGCGAAGAGTTTGAGGCCCTATACGAGAAATACGAGAAGGAGGGCCGTGGTCGTGAGACC 460728 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | ||| | || | ||||| | || ||||| || | || ||||||||||| | || Sbjct 460727 ATCCGTGCT-CAGAAGCTGTGGTATGCCATTCTTCAGGCACAGACCGAGACTGGCAATCC 460669 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||| ||||| ||||| || |||| ||||| || || || || |||| || Sbjct 460668 CTTCATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAAAACCTGGGAACCAT 460609 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || ||||| || || || || ||| | || | || | | ||| ||| || || Sbjct 460608 CCGCAGCTCCAACCTTTGCACCGAGATCATTGAGTACACTGCCCCAGACGAGGTCGCGGT 460549 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT-CCA---GAGACAAAGACAT 105104 ||||||| | || || | ||||| || | | ||| ||| || | | | || || Sbjct 460548 GTGTAACTTGGCCTCTCTGGCTCTGCCAACCTTTGTCGATGTCATGCGTGGCGAATAC-- 460491 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 || | | || || || || || || |||| ||| | |||| | | Sbjct 460490 --GACTTCAAGAAGCTGCATGAGGTCACCCGCCATGTCGTTCGCAACTTGAACAAGATCA 460433 Query 105165 TTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 | || | || ||||| || ||| || ||||| ||| |||||||||||||| Sbjct 460432 TCGACATTAACCACTACCCTGTACCAGA-GGCACGTAACAGTAACATGAGACACCGTCCT 460374 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGA 105282 || ||| ||||||| |||||||| || |||| ||| | || || || | |||| || Sbjct 460373 ATCGGTGTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTCGCTCTG-CGGCTGCCATTCGA 460315 Query 105283 TTCCGACGAAG--CGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || | || | | | || | || ||||| ||||| || ||||||||| Sbjct 460314 CTCTCCAGAGGCTCGTATG--CTGAACATCCAAATCTTTGAAACCATATACCACGCCGCT 460257 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 || || | ||| | || | | | ||||| ||| | | |||||| || Sbjct 460256 CTGACAGCTTCGTGTGAGCTTGCCAAAGAGCAAGGTCCCTATTCGAGTTATGAGGGCTCG 460197 Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACT 105458 || | || || ||| | | || | ||| |||| |||| |||| |||| || || || Sbjct 460196 CCCGTGTCCCAGGGGATTTTGCAGTATGACATGT-GGAACGTGACTCCAA-CTGATCTCT 460139 Query 105459 ACGACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 |||||||| ||| ||||| | ||||| || | ||| | || ||| | ||| Sbjct 460138 GGGACTGGGACAGC-CTCAAAGCTGAGATCAAAAAGCATGGTGTCCGCAACTCCTTACTC 460080 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 |||| || |||||||| || || || | || ||| ||||||| || || ||||| || Sbjct 460079 GTGGCGCCCATGCCAACCGCTTCAACTTCTCAGATCCTGGGTAACAACGAGTGCTTCGAG 460020 Query 105578 CCCTACACGACGAACATCTATCTGA-GAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 || || || | |||||||| || | | | ||||| || ||||| | | ||||| Sbjct 460019 CCATATACCTCAAACATCTA-CTCACGTCGCGTGCTCGCCGGCGAGTTCCAGGTCGTCAA 459961 Query 105637 --CAAGCAT-CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA 105693 | | | ||| | || ||| || || ||| | ||||| | |||||||| | Sbjct 459960 TCCTTGGTTGCTC---AAAGATCTCGTTGACATGGGTTTGTGGTCTGACAATATGAAGAA 459904 Query 105694 TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAA 105753 | ||| | | ||||||||| ||||| ||| | |||||| |||| ||||| Sbjct 459903 CCGCATCATTGCGGAGGGTGGTTCGATTCAGCGCATTCCAAACATTCCAGATGATATTAA 459844 Query 105754 GAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAG-GATGTCATTGACATGGCCGCAG 105812 |||||| || || |||||||| ||| | | ||||||| | |||||||| | Sbjct 459843 AGCATTGTACAAGACGGTCTGGGAAAT-AAGCCAACGCCATGTCATCCAGATGGCCGCCG 459785 Query 105813 ATCGTGGTCGC-TTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACG 105871 ||||||| ||| |||||||| ||| || | | || || |||| | |||||| Sbjct 459784 ATCGTGG-CGCGTTCATTGACCAATCCCAGTCTCTCAACATCCACATGAAGGAACCAACG 459726 Query 105872 ATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 105931 ||| |||| || | || ||||| | | |||||| |||||||| || || ||| Sbjct 459725 ATGGGCAAGATCACCTCCATGCATTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGCATG 459666 Query 105932 TATTACCTCCG 105942 || || || || Sbjct 459665 TACTATCTGCG 459655 >seq15 Length=603150 Score = 118 bits (130), Expect = 1e-21 Identities = 295/441 (67%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTAT 94865 || ||| |||| || || || ||||| ||||||||||||||| |||| ||| | || Sbjct 375911 CGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTT-TGCTTCCAT 375969 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 | ||||| |||||||||||||||||||| || | ||||||||||||||| || || Sbjct 375970 CTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCAACGAGCTCATTTC 376029 Query 94926 TCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCA-AATTATTGCGTATTA 94984 || |||||||| | ||| || || || || |||| || ||| | | || Sbjct 376030 ACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCATGATT-CAAAATA 376088 Query 94985 AACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGAT 95044 | || | | ||| | | | | | || | | || || || || ||||||| | Sbjct 376089 AGCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCATCGAGAAAGAGT 376148 Query 95045 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAAT 95104 || | || ||||| || ||| || ||||||||||| | || |||| | | Sbjct 376149 TCCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAATGCAGACCTTATGTGCCAGT 376208 Query 95105 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA--TTTGGAA 95162 | ||||||| |||| | || | ||| | | | | || || | | || | | || Sbjct 376209 ACATTGAGTTTGTAGCAGACCGCTTGCTCATG--GCTCTCGGCAACACAAAGGTGTACAA 376266 Query 95163 CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTT 95222 | | | ||| || || ||||||||||||||||| || | || |||||||| ||||| Sbjct 376267 CGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAAGACAAATTTCTT 376326 Query 95223 CGAAAAGAGGGTTGGGGACTA 95243 ||| ||| | ||||| ||||| Sbjct 376327 CGAGAAGCGCGTTGGCGACTA 376347 >seq29 Length=351414 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGA 9761 |||||| || ||||||||||| | |||||| ||| || ||||| ||||| | || | Sbjct 320014 GGCATCGATTTCATCAATGAATATGATGCAAGGTGTGTTTTTC-CGAGCTGTCGCGAACA 320072 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 ||| || |||||| | || || || || ||||| || ||||| | | | | || Sbjct 320073 AATCTCGAACACGCGATGGACCAACTCCGACGAACATTTCAACAAATTCAGAACCAG-AC 320131 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 | | || ||| || ||| ||||| |||||| | ||| || ||||| || |||||| Sbjct 320132 ACGGAGAAGAATGGCACACCTGATTCTCCCGCAGTAGCTTTTGCCAGAAGTGTTTTACCC 320191 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 || ||||| || | | || |||||| || |||||||| || ||| Sbjct 320192 GTTCCTGGAGGTCCAGACAAGATGGCACCGCGGGGAATCTTTGCTCCA 320239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258124291080