Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq23 253 6e-62
seq48 136 1e-26
seq34 127 6e-24
seq22 93.3 1e-13
seq2 91.5 4e-13
>seq23
Length=461238
Score = 253 bits (280), Expect = 6e-62
Identities = 935/1450 (64%), Gaps = 21/1450 (1%)
Strand=Plus/Minus
Query 349203 TAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAG 349262
|||| |||||| | || ||||| || || ||||| | | | | | |||| | | |
Sbjct 7358 TAGGTATCGATCTTGGAACTACCTACTCATGTGTAGGCATCTTCCGAGATGACAGAATCG 7299
Query 349263 AAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAA 349322
|||| ||||| || || || || ||| | |||||||| || | ||| || || ||||| |
Sbjct 7298 AAATTATTGCCAACGACCAGGGCAACCGCACAACGCCCTCCTTCGTCGCCTTCACCGACA 7239
Query 349323 CTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGG 349382
| |||||| |||| |||||| | || || || || | || || || |||||| |
Sbjct 7238 CCGAGCGTTTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCGCAAATACCG 7179
Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGA 349440
| || || || |||||| | || ||| | | || | || || | | || | ||
Sbjct 7178 TCTTCGACGCAAAGCGATTGATCGGTCGCAAGTTCGCCGATCCAGAAGTTCAGG--CCGA 7121
Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500
| | || || || || || | || | | | ||| || | || || || || ||||
Sbjct 7120 TATCAAGCACTTCCCATTCAAGGTCAT-CGACAAG--GGCGGCAAGCCCATCATCCAGGT 7064
Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560
|| | || || || || |||| || || ||||| || || ||||| |
Sbjct 7063 CGAGTTCAAGGGCGAGACCAAGGAATTCACTCCAGAGGAAATCTCGTCTATGGTCCTGAC 7004
Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620
|| ||| || | || || | ||| | || || || | | || || || ||
Sbjct 7003 CAAGATGCGTGAGACAGCCGAGTCGTATCTTGGCTGCACCGTCAACAACGCCGTCATCAC 6944
Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680
||| |||||||| || || || | |||||| || ||||| || ||||| ||| ||
Sbjct 6943 TGTTCCAGCCTACTTCAACGACTCACAGCGTCAAGCGACAAAGGACGCTGGTCTCATCGC 6884
Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740
|| | || ||||| |||| || || || || || || || || || ||||| || ||
Sbjct 6883 AGGCCTCAACGTTCTCCGAATCATCAACGAGCCAACCGCCGCTGCTATCGCATACGGTCT 6824
Query 349741 TGATAAAATGAGT---GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797
|| || | | || | | || || ||| | || ||||||||| | || ||||||||
Sbjct 6823 GGACAAGAAGGGTACGGCCGGCGAGAAGAATGTCCTCATTTTTGATCTCGGCGGTGGTAC 6764
Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857
|| ||||| || || || || | || ||||| ||||| || || || || ||||||||
Sbjct 6763 CTTCGATGTGTCTCTCCTTACCATCGAGGAGGGTATTTTCGAGGTCAAGGCTACTGCTGG 6704
Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917
||| || || | ||||| ||||| |||||||| || || || || || || || ||
Sbjct 6703 TGACACTCACTTGGGTGGTGAAGACTTTGATAACCGCCTTGTGAACCACTTCGTCAACGA 6644
Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976
||| ||||| ||||| || | ||| | ||| || | || |||| || ||
Sbjct 6643 ATTCAAGCG-CAAGCACAAGAAGGATCTCACCTCTAACGCTCGTGCTCTGCGCCGTCTTC 6585
Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAAACCTCTATTGAA 350035
| ||||| || || ||||| |||||| | || || || | | || || || || |||
Sbjct 6584 GCACTGCTTGCGAGCGTGCCAAGCGTACTCTGTCCAGCT-CAGCTCAGACTTCGATCGAA 6526
Query 350036 ATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095
|| || || || ||| |||| || |||| | || || || |||||||| || ||
Sbjct 6525 ATCGACTCGCTGTATGAGGGCATCGACTTCTACACCTCAATCACCCGTGCTCGATTCGAG 6466
Query 350096 GAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155
||| | || || || || | | || ||||| || || || || | ||
Sbjct 6465 GAACTGTGCCAAGACCTCTTCCGCTCCACCATGGAGCCCGTTGAGCGTGTCCTGCGCGAC 6406
Query 350156 GCAAA-AATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTAT 350214
||||| | || | | || | || | || | || | ||||| ||||| || |||||
Sbjct 6405 GCAAAGATTGACAAGTCCTCTG-TTCACGAGATCGTCCTCGTTGGCGGTTCCACTCGTAT 6347
Query 350215 TCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAAT 350274
|| || | || || | | || || || || ||||||||||| || | |||||
Sbjct 6346 CCCCAAGATCCAGAAGCTTGTCTCCGATTTCTTCAATGGCAAAGAGCCGAACAAGTCAAT 6287
Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334
|| || |||||||| ||||| |||||||||||||| ||||| | || || || || |
Sbjct 6286 CAACCCTGATGAAGCCGTTGCCTATGGTGCTGCTGTCCAGGCCGCCATCTTGTCCGGCGA 6227
Query 350335 TAAGAGTTCTAAAATTGA----TGATCTATTACTACTAGATGTAACTCCACTTTCGCTTG 350390
|| || || | || || | | || || || || |||| || || |||
Sbjct 6226 TACATCCTC-CAAGTCGACCAGCGAGATCCTGCTTCTCGACGTTGCTCCCCTCTCCATTG 6168
Query 350391 GATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTA 350450
| | || || |||||| || ||||| || ||| | || | || | || |
Sbjct 6167 GTATCGAGACCGCTGGTGGTGTTATGACACCACTCATTAAGCGCAACACCACCATCCCAA 6108
Query 350451 CAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAG 350510
| || |||||| |||| || || || || || || ||||| | || || || |
Sbjct 6107 CCAAGAAGTCCGAAACCTTCTCCACTTTCAGCGACAACCAGCCTGGTGTGCTGATCCAGG 6048
Query 350511 TATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAA 350570
| | ||||||||||||||| | || || || || || || || | || || |
Sbjct 6047 TGTACGAAGGTGAACGTGCTAGGACCAAGGACAACAACTTGCTGGGCAAGTTCGAGCTCA 5988
Query 350571 GTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATT 350630
| || ||||| ||| | || ||||||||||| || ||| | |||||| | |||
Sbjct 5987 CGGGTATCCCACCTGCTCCTCGTGGTGTTCCTCAGATCGAGGTCACATTCGATGTCGATG 5928
Query 350631 CAAATGGTAT 350640
| || |||||
Sbjct 5927 CCAACGGTAT 5918
Score = 172 bits (190), Expect = 2e-37
Identities = 179/235 (76%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| || || | | ||| ||||| || ||||||||||| ||||||||||| |
Sbjct 205099 TTTGCATACCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGT 205040
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| ||||| | || || |||||||| || ||||| ||||| ||||| || || ||||| |
Sbjct 205039 AGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGT 204980
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || ||||||||||| | || || ||||| || | ||||||||
Sbjct 204979 CTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATG 204920
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| || | |||||||| || || || || || || ||||||||
Sbjct 204919 ACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865
>seq48
Length=172814
Score = 136 bits (150), Expect = 1e-26
Identities = 483/741 (65%), Gaps = 29/741 (4%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| || |||||||| ||||| ||||| ||||| ||| | || || || |||||
Sbjct 7526 GCCGTAATTACTGTTCCAGCATATTTCAATGACAATCAGAGACAAGCTACCAAGGATGCC 7467
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
||| || | || | || || || |||| || || ||||| |||||||| || |||
Sbjct 7466 GGCTCAATCTCTGGCCTGAACGTACTCCGAATTATCAACGAACCTACTGCTGCCGCCATT 7407
Query 349730 GCATATGGGCTTGA---TAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786
|| ||||| |||| | | || ||| | || |||| |||| || | ||| |
Sbjct 7406 GCGTATGGACTTGGCTCTGGTAAGACTGAGCGTGAGCGAAATGTTCTCATCTATGACCTC 7347
Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTG-AAGAGGGAATTTTTGAAGTTAA 349845
||||| ||||| ||||||||||| || || ||| | ||| || | || || ||
Sbjct 7346 GGTGGCGGTACCTTTGATGTATCCCTTCTT-CACATCCAAGGTGGCGTGTTCACCGTCAA 7288
Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA---TAATCGTCTCGTTTC 349902
|| |||||||||||||||||||| || || | |||||||| || | |||||
Sbjct 7287 GGCTACTGCTGGTGATACACATCTCGGAGGTCAGGATTTTGACACCAACCTTCTCG---A 7231
Query 349903 GCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATAT---TGGAGATAATCCTA 349958
||||||| ||||| || |||| |||| |||| | || || ||||| | |||
Sbjct 7230 GCATTTTAAGAAAGAGTTCCAGCG-CAAGACTAAGAAGGACATGTCTGGAG--ACTCC-C 7175
Query 349959 GAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTA 350018
| || | || | || |||||||| ||||| ||||| ||||| | || || ||| |
Sbjct 7174 GTGCTCTACGAAGACTCAGAACTGCCTGTGAGCGTGCGAAGCGCACATTGTCCTCTGCCT 7115
Query 350019 CCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTA 350078
| || || | || || || ||||| |||||| | || ||| | | || |
Sbjct 7114 CTTCCACTACTGTGGAGATAGACTCTCTCTTTGATGGTGAGGACTTCACAGCCACCATCA 7055
Query 350079 CACGTGCTCGGTTTGAAGAATT---ATGTATGGATCTTTTTAGAGCAACAATGGATCCTG 350135
|||| || || || || || | | | || ||||| | || | | || |
Sbjct 7054 CACGCGCCCGCTTCGAGGAGCTGAACTCCAAGG---CTTTTACTGGTACTCTCCAACCCG 6998
Query 350136 TGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAG 350195
| || |||| | || ||||| | |||| || ||||||| | || | |
Sbjct 6997 TAGAGCAAGTCCTTAAGGATGCTGGCCTCGATAAAAGCAAGGTTGATGAGATCGTGCTTG 6938
Query 350196 TTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCA 350255
||||||| || || ||||| ||| | || || | || ||| || ||||| ||
Sbjct 6937 TTGGTGGCTCGACCCGTATCCCACGGATACAGAAGCTTCTCAGTGAATTCTTTAACAACA 6878
Query 350256 AAGAACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCA 350313
|| ||| | ||| | || || || ||||| || |||||||||||||||||||||||
Sbjct 6877 AAAAAC--TTGAGAAGAGTATCAACCCTGATGAGGCAGTTGCATATGGTGCTGCTGTTCA 6820
Query 350314 GGCATCTATTTTATCTGGAAA 350334
|| |||| | ||||| ||
Sbjct 6819 AGCTGGTATTCTCTCTGGTAA 6799
>seq34
Length=272164
Score = 127 bits (140), Expect = 6e-24
Identities = 194/275 (71%), Gaps = 6/275 (2%)
Strand=Plus/Plus
Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676
|||| || || || || || || |||||||||||| | || || || ||||| |||| ||
Sbjct 77760 TTACCGTCCCGGCATACTTCAACGATGCCCAGCGTGCCGCCACCAAGGATGCAGGCACCA 77819
Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736
||||||| |||| ||||| | | | || || ||||| || || || | || ||||
Sbjct 77820 TTGCGGGTCTAAACGTTCTCCGTGTCGTCAACGAGCCCACCGCCGCCGCTCTCGCCTATG 77879
Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTA---TTCTTATTTTTGATTTAGGTGGTG 349793
| ||||| || || ||| | || | | ||||| | | |||| | |||||||
Sbjct 77880 GTCTTGACAA---GACCGACAAGGATGAGCGTCAGGTTCTTGTCTATGATCTTGGTGGTG 77936
Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853
|||| |||||||| || | ||||| | || | || ||||||| || |||||||
Sbjct 77937 GTACCTTTGATGTTTCCATCCTAACCATCGATCAAGGCGTTTTTGAGGTCTTGGCAACTG 77996
Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888
||||||| || ||||| ||||| || || || |||
Sbjct 77997 CTGGTGACACTCATCTGGGTGGCGAGGACTTCGAT 78031
>seq22
Length=482228
Score = 93.3 bits (102), Expect = 1e-13
Identities = 100/132 (76%), Gaps = 3/132 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| |||||||| | ||||| ||| || || || |||||||| || ||||| |||||
Sbjct 213324 CGAGGCACACCGAGAGTAACGTTC---TTGGAAGCCACACCAGCGAAATGGAAGGTATTC 213380
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| ||||||||||| ||||| || || | ||| |||||||| ||
Sbjct 213381 AGCGTCATCTGGGTAGCCGGCTCACCAATGGACTGTGCAGCCAAAACACCAACCATATCG 213440
Query 377578 CCAGGATTGACA 377589
|||||| ||||
Sbjct 213441 CCAGGAGCGACA 213452
>seq2
Length=1312579
Score = 91.5 bits (100), Expect = 4e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633
|| || ||||||||||| || || ||||||||||| | || ||||| || || || ||
Sbjct 554514 GTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATA 554573
Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693
|| ||||| ||||| || || | || ||||| || |||| ||| || | || || |||
Sbjct 554574 CCCTCTTTGTCCTGGATCTTGGTCTTCACATTGTCGATCGTATCCGACGACTCCACCTCA 554633
Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|| || | ||||| || || || || || || ||
Sbjct 554634 AGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 554668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515247274989701
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