Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq23 253 6e-62 seq48 136 1e-26 seq34 127 6e-24 seq22 93.3 1e-13 seq2 91.5 4e-13 >seq23 Length=461238 Score = 253 bits (280), Expect = 6e-62 Identities = 935/1450 (64%), Gaps = 21/1450 (1%) Strand=Plus/Minus Query 349203 TAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAG 349262 |||| |||||| | || ||||| || || ||||| | | | | | |||| | | | Sbjct 7358 TAGGTATCGATCTTGGAACTACCTACTCATGTGTAGGCATCTTCCGAGATGACAGAATCG 7299 Query 349263 AAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAA 349322 |||| ||||| || || || || ||| | |||||||| || | ||| || || ||||| | Sbjct 7298 AAATTATTGCCAACGACCAGGGCAACCGCACAACGCCCTCCTTCGTCGCCTTCACCGACA 7239 Query 349323 CTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGG 349382 | |||||| |||| |||||| | || || || || | || || || |||||| | Sbjct 7238 CCGAGCGTTTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCGCAAATACCG 7179 Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGA 349440 | || || || |||||| | || ||| | | || | || || | | || | || Sbjct 7178 TCTTCGACGCAAAGCGATTGATCGGTCGCAAGTTCGCCGATCCAGAAGTTCAGG--CCGA 7121 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | | || || || || || | || | | | ||| || | || || || || |||| Sbjct 7120 TATCAAGCACTTCCCATTCAAGGTCAT-CGACAAG--GGCGGCAAGCCCATCATCCAGGT 7064 Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 || | || || || || |||| || || ||||| || || ||||| | Sbjct 7063 CGAGTTCAAGGGCGAGACCAAGGAATTCACTCCAGAGGAAATCTCGTCTATGGTCCTGAC 7004 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | || || | ||| | || || || | | || || || || Sbjct 7003 CAAGATGCGTGAGACAGCCGAGTCGTATCTTGGCTGCACCGTCAACAACGCCGTCATCAC 6944 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 ||| |||||||| || || || | |||||| || ||||| || ||||| ||| || Sbjct 6943 TGTTCCAGCCTACTTCAACGACTCACAGCGTCAAGCGACAAAGGACGCTGGTCTCATCGC 6884 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || ||||| |||| || || || || || || || || || ||||| || || Sbjct 6883 AGGCCTCAACGTTCTCCGAATCATCAACGAGCCAACCGCCGCTGCTATCGCATACGGTCT 6824 Query 349741 TGATAAAATGAGT---GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || | | || | | || || ||| | || ||||||||| | || |||||||| Sbjct 6823 GGACAAGAAGGGTACGGCCGGCGAGAAGAATGTCCTCATTTTTGATCTCGGCGGTGGTAC 6764 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || || || | || ||||| ||||| || || || || |||||||| Sbjct 6763 CTTCGATGTGTCTCTCCTTACCATCGAGGAGGGTATTTTCGAGGTCAAGGCTACTGCTGG 6704 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| ||||| |||||||| || || || || || || || || Sbjct 6703 TGACACTCACTTGGGTGGTGAAGACTTTGATAACCGCCTTGTGAACCACTTCGTCAACGA 6644 Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 ||| ||||| ||||| || | ||| | ||| || | || |||| || || Sbjct 6643 ATTCAAGCG-CAAGCACAAGAAGGATCTCACCTCTAACGCTCGTGCTCTGCGCCGTCTTC 6585 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAAACCTCTATTGAA 350035 | ||||| || || ||||| |||||| | || || || | | || || || || ||| Sbjct 6584 GCACTGCTTGCGAGCGTGCCAAGCGTACTCTGTCCAGCT-CAGCTCAGACTTCGATCGAA 6526 Query 350036 ATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095 || || || || ||| |||| || |||| | || || || |||||||| || || Sbjct 6525 ATCGACTCGCTGTATGAGGGCATCGACTTCTACACCTCAATCACCCGTGCTCGATTCGAG 6466 Query 350096 GAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155 ||| | || || || || | | || ||||| || || || || | || Sbjct 6465 GAACTGTGCCAAGACCTCTTCCGCTCCACCATGGAGCCCGTTGAGCGTGTCCTGCGCGAC 6406 Query 350156 GCAAA-AATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTAT 350214 ||||| | || | | || | || | || | || | ||||| ||||| || ||||| Sbjct 6405 GCAAAGATTGACAAGTCCTCTG-TTCACGAGATCGTCCTCGTTGGCGGTTCCACTCGTAT 6347 Query 350215 TCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAAT 350274 || || | || || | | || || || || ||||||||||| || | ||||| Sbjct 6346 CCCCAAGATCCAGAAGCTTGTCTCCGATTTCTTCAATGGCAAAGAGCCGAACAAGTCAAT 6287 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || |||||||| ||||| |||||||||||||| ||||| | || || || || | Sbjct 6286 CAACCCTGATGAAGCCGTTGCCTATGGTGCTGCTGTCCAGGCCGCCATCTTGTCCGGCGA 6227 Query 350335 TAAGAGTTCTAAAATTGA----TGATCTATTACTACTAGATGTAACTCCACTTTCGCTTG 350390 || || || | || || | | || || || || |||| || || ||| Sbjct 6226 TACATCCTC-CAAGTCGACCAGCGAGATCCTGCTTCTCGACGTTGCTCCCCTCTCCATTG 6168 Query 350391 GATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTA 350450 | | || || |||||| || ||||| || ||| | || | || | || | Sbjct 6167 GTATCGAGACCGCTGGTGGTGTTATGACACCACTCATTAAGCGCAACACCACCATCCCAA 6108 Query 350451 CAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAG 350510 | || |||||| |||| || || || || || || ||||| | || || || | Sbjct 6107 CCAAGAAGTCCGAAACCTTCTCCACTTTCAGCGACAACCAGCCTGGTGTGCTGATCCAGG 6048 Query 350511 TATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAA 350570 | | ||||||||||||||| | || || || || || || || | || || | Sbjct 6047 TGTACGAAGGTGAACGTGCTAGGACCAAGGACAACAACTTGCTGGGCAAGTTCGAGCTCA 5988 Query 350571 GTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATT 350630 | || ||||| ||| | || ||||||||||| || ||| | |||||| | ||| Sbjct 5987 CGGGTATCCCACCTGCTCCTCGTGGTGTTCCTCAGATCGAGGTCACATTCGATGTCGATG 5928 Query 350631 CAAATGGTAT 350640 | || ||||| Sbjct 5927 CCAACGGTAT 5918 Score = 172 bits (190), Expect = 2e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | ||| ||||| || ||||||||||| ||||||||||| | Sbjct 205099 TTTGCATACCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGT 205040 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || |||||||| || ||||| ||||| ||||| || || ||||| | Sbjct 205039 AGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGT 204980 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||||||||| | || || ||||| || | |||||||| Sbjct 204979 CTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATG 204920 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | |||||||| || || || || || || |||||||| Sbjct 204919 ACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 >seq48 Length=172814 Score = 136 bits (150), Expect = 1e-26 Identities = 483/741 (65%), Gaps = 29/741 (4%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || |||||||| ||||| ||||| ||||| ||| | || || || ||||| Sbjct 7526 GCCGTAATTACTGTTCCAGCATATTTCAATGACAATCAGAGACAAGCTACCAAGGATGCC 7467 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 ||| || | || | || || || |||| || || ||||| |||||||| || ||| Sbjct 7466 GGCTCAATCTCTGGCCTGAACGTACTCCGAATTATCAACGAACCTACTGCTGCCGCCATT 7407 Query 349730 GCATATGGGCTTGA---TAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 || ||||| |||| | | || ||| | || |||| |||| || | ||| | Sbjct 7406 GCGTATGGACTTGGCTCTGGTAAGACTGAGCGTGAGCGAAATGTTCTCATCTATGACCTC 7347 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTG-AAGAGGGAATTTTTGAAGTTAA 349845 ||||| ||||| ||||||||||| || || ||| | ||| || | || || || Sbjct 7346 GGTGGCGGTACCTTTGATGTATCCCTTCTT-CACATCCAAGGTGGCGTGTTCACCGTCAA 7288 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA---TAATCGTCTCGTTTC 349902 || |||||||||||||||||||| || || | |||||||| || | ||||| Sbjct 7287 GGCTACTGCTGGTGATACACATCTCGGAGGTCAGGATTTTGACACCAACCTTCTCG---A 7231 Query 349903 GCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATAT---TGGAGATAATCCTA 349958 ||||||| ||||| || |||| |||| |||| | || || ||||| | ||| Sbjct 7230 GCATTTTAAGAAAGAGTTCCAGCG-CAAGACTAAGAAGGACATGTCTGGAG--ACTCC-C 7175 Query 349959 GAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTA 350018 | || | || | || |||||||| ||||| ||||| ||||| | || || ||| | Sbjct 7174 GTGCTCTACGAAGACTCAGAACTGCCTGTGAGCGTGCGAAGCGCACATTGTCCTCTGCCT 7115 Query 350019 CCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTA 350078 | || || | || || || ||||| |||||| | || ||| | | || | Sbjct 7114 CTTCCACTACTGTGGAGATAGACTCTCTCTTTGATGGTGAGGACTTCACAGCCACCATCA 7055 Query 350079 CACGTGCTCGGTTTGAAGAATT---ATGTATGGATCTTTTTAGAGCAACAATGGATCCTG 350135 |||| || || || || || | | | || ||||| | || | | || | Sbjct 7054 CACGCGCCCGCTTCGAGGAGCTGAACTCCAAGG---CTTTTACTGGTACTCTCCAACCCG 6998 Query 350136 TGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAG 350195 | || |||| | || ||||| | |||| || ||||||| | || | | Sbjct 6997 TAGAGCAAGTCCTTAAGGATGCTGGCCTCGATAAAAGCAAGGTTGATGAGATCGTGCTTG 6938 Query 350196 TTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCA 350255 ||||||| || || ||||| ||| | || || | || ||| || ||||| || Sbjct 6937 TTGGTGGCTCGACCCGTATCCCACGGATACAGAAGCTTCTCAGTGAATTCTTTAACAACA 6878 Query 350256 AAGAACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCA 350313 || ||| | ||| | || || || ||||| || ||||||||||||||||||||||| Sbjct 6877 AAAAAC--TTGAGAAGAGTATCAACCCTGATGAGGCAGTTGCATATGGTGCTGCTGTTCA 6820 Query 350314 GGCATCTATTTTATCTGGAAA 350334 || |||| | ||||| || Sbjct 6819 AGCTGGTATTCTCTCTGGTAA 6799 >seq34 Length=272164 Score = 127 bits (140), Expect = 6e-24 Identities = 194/275 (71%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 |||| || || || || || || |||||||||||| | || || || ||||| |||| || Sbjct 77760 TTACCGTCCCGGCATACTTCAACGATGCCCAGCGTGCCGCCACCAAGGATGCAGGCACCA 77819 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 ||||||| |||| ||||| | | | || || ||||| || || || | || |||| Sbjct 77820 TTGCGGGTCTAAACGTTCTCCGTGTCGTCAACGAGCCCACCGCCGCCGCTCTCGCCTATG 77879 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTA---TTCTTATTTTTGATTTAGGTGGTG 349793 | ||||| || || ||| | || | | ||||| | | |||| | ||||||| Sbjct 77880 GTCTTGACAA---GACCGACAAGGATGAGCGTCAGGTTCTTGTCTATGATCTTGGTGGTG 77936 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 |||| |||||||| || | ||||| | || | || ||||||| || ||||||| Sbjct 77937 GTACCTTTGATGTTTCCATCCTAACCATCGATCAAGGCGTTTTTGAGGTCTTGGCAACTG 77996 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 ||||||| || ||||| ||||| || || || ||| Sbjct 77997 CTGGTGACACTCATCTGGGTGGCGAGGACTTCGAT 78031 >seq22 Length=482228 Score = 93.3 bits (102), Expect = 1e-13 Identities = 100/132 (76%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | ||||| ||| || || || |||||||| || ||||| ||||| Sbjct 213324 CGAGGCACACCGAGAGTAACGTTC---TTGGAAGCCACACCAGCGAAATGGAAGGTATTC 213380 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| ||||||||||| ||||| || || | ||| |||||||| || Sbjct 213381 AGCGTCATCTGGGTAGCCGGCTCACCAATGGACTGTGCAGCCAAAACACCAACCATATCG 213440 Query 377578 CCAGGATTGACA 377589 |||||| |||| Sbjct 213441 CCAGGAGCGACA 213452 >seq2 Length=1312579 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || ||||||||||| || || ||||||||||| | || ||||| || || || || Sbjct 554514 GTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATA 554573 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || ||||| ||||| || || | || ||||| || |||| ||| || | || || ||| Sbjct 554574 CCCTCTTTGTCCTGGATCTTGGTCTTCACATTGTCGATCGTATCCGACGACTCCACCTCA 554633 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || || | ||||| || || || || || || || Sbjct 554634 AGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 554668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247274989701