Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10 125 8e-24 >seq10 Length=848763 Score = 125 bits (138), Expect = 8e-24 Identities = 385/590 (65%), Gaps = 4/590 (1%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | || || |||||||| ||| | ||| | |||||| |||||| Sbjct 461363 ATGCGTGTTGCGGTTGGCATACACGGTGAAGACATTGAGAGTGCCATTGAGACTTACGAC 461304 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | |||||||| || ||||| | || || ||||| || ||||| ||| Sbjct 461303 TACATGTCGAATAAGTACTTCACACACGCGTCTCCCACTCTGTTTAATGCTGGCACGCCG 461244 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || ||| | || ||||||||| | | |||||||| ||| || || |||||| Sbjct 461243 TCGCCGCAGCTCTCCTCCTGCTTCCTCATCGATATGAAGGAGGACAGCATAGAGGGCATC 461184 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| ||||||||| ||||| || || ||| | ||||| |||||| | || Sbjct 461183 TACGACACGCTCAAGACCTGTGCTATGATTTCAAAGACTGCCGGTGGCATCGGTCTGAAC 461124 Query 53435 -TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGG 53493 | | | | | ||||||| || | || || || |||||| || | || Sbjct 461123 GTACAC-CGCATTCGTGCGACTGGTTCGTACATTGGTGGTACCAACGGCACATCCAACGG 461065 Query 53494 AATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGG 53553 | | |||||| | || |||| | | ||| || || || || | |||||||| Sbjct 461064 TCTAATTCCTATGTTGCGTGTCTACGATGCCACCGCTCGATATGTTGATCAGGGTGGCAA 461005 Query 53554 GAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTT 53613 |||||| || | |||||||| ||||| ||||| ||||| || |||||| | | | Sbjct 461004 CAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCATGGCATGCTGACATTTTTGGCTG 460945 Query 53614 TCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAG 53672 || || |||| ||| || ||| | ||||||| || ||| ||||| || || | Sbjct 460944 GCTTGACTTGCGCAAGAACCACGGTAAGGAAGAGAACCG-TGCTCGTGATCTCTTCTATG 460886 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 || |||||| || || || |||||| || || || || | | |||| || Sbjct 460885 CTTTGTGGACGCCTGATCTGTTCATGAAACGAGTTGAACAGAATGGTATGTGGACACTCT 460826 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 | || || || || || |||||| | ||||||||| || |||||| Sbjct 460825 TCTGTCCCAATGAAGCACCTGGCCTCGCCGATGTCTACGGCGAAGAGTTT 460776 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || |||||||| |||| ||| ||||| ||||||||||| |||||| |||| || | || Sbjct 459788 GCCGATCGTGGCGCGTTCATTGACCAATCCCAGTCTCTCAACATCCACATGAAGGAACCA 459729 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | ||| ||||| || || |||||| || |||||||| || Sbjct 459728 ACGATGGGCAAGATCACCTCCATGCATTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 459669 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||||||||| || Sbjct 459668 ATGTACTATCTGCGTAC 459652 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||||||| | ||||||||||| ||||||||||| || || |||||||| |||| ||| Sbjct 460094 CGCAACTCCTTACTCGTGGCGCCCATGCCAACCGCTTCAACTTCTCAGATCCTGGGTAAC 460035 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||| |||||||| || || | ||||||||| Sbjct 460034 AACGAGTGCTTCGAGCCATATACCTCAAACATCTAC 459999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213489646600