Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq23 188 8e-43 seq10 178 1e-39 seq2 132 5e-26 seq9 107 2e-18 >seq23 Length=461238 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || |||||||| |||||| | Sbjct 204865 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACGCTTGAGGTCGAGTCATCT 204924 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | |||||||||||||||||||| || || ||||||||| Sbjct 204925 GATACCATCGATAACGTCAAGACCAAAATTCAGGACAAGGAGGGCATCCCACCAGACCAG 204984 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || |||||||| || ||||| |||| ||||| || | ||||| ||| Sbjct 204985 CAGCGCCTGATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACTCTGTCTGACTACAAT 205044 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || ||||| || || || | ||||||||||| || Sbjct 205045 ATTCAAAAGGAGTCTACTCTGCACCTTGTGCTACGTCTTCGCGGAGG 205091 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || |||||||| || || ||||| || || || || ||||| || Sbjct 205093 ATGCAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCA 205152 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||| | || ||||| ||||||||||| ||||| ||||| ||| Sbjct 205153 GACACGATTGACAATGTGAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 205212 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || |||||||||||||| ||||||| ||| || || ||||||| || Sbjct 205213 CAGCGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACAAC 205272 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | |||||||| || ||||| || | || | ||||| || || || || Sbjct 205273 ATTCAAAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGGTCA 205322 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || ||||| ||||| || | ||| | ||| | ||| | Sbjct 204487 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGACC 204546 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| || || |||||||||||||| || || || |||||||| Sbjct 204547 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCTGGTAAA 204606 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || | || || || | ||||| || Sbjct 204607 CAGCTCGAAGACGGCCGCACTCTGTCCGACTACAA 204641 >seq10 Length=848763 Score = 178 bits (196), Expect = 1e-39 Identities = 1112/1766 (63%), Gaps = 69/1766 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || ||||||||||||||||| |||||||| || ||||||||| | ||| Sbjct 459646 GCCTGTGTACGCAGATAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGC 459705 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || ||| ||| | | || || | || |||| |||||| |||||||| || || Sbjct 459706 ATGGAGGTGATCTTGCCCATCGTTGGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGG 459765 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210 ||||| || |||||||| || ||||| | || | || | || | | ||||||| Sbjct 459766 TCAATGAACGCGCCACGATCGGCGGCCATCTGGATGACATGGCGTTGGCTTA-TTTCCCA 459824 Query 80211 TACTGTACGATACAC--CTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTG--- 80265 || || |||| ||| || || |||||||||| || | || | | Sbjct 459825 GACCGTCTTGTACAATGCTTT--AATATCATCTGGAATGTTTGGAATGCGCTGAATCGAA 459882 Query 80266 CCACCGTCCTTTACAATTTGATTTTTCA-ATT--CAGACGTCCAGACACCAAGCTTGTGC 80322 ||||| ||| | || | || |||| ||| ||||| || | ||| | | Sbjct 459883 CCACCCTCCGCAATGATGCGGTTCTTCATATTGTCAGAC---CACAAACCCATGTCAACG 459939 Query 80323 AGATCTTTCA-----CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGAC 80377 |||||||| | ||||| ||| | | || |||| || ||||| ||||| Sbjct 459940 AGATCTTTGAGCAACCAAGGA--TTGACGACCTGGA---ACTCGCCGGCGAGCACGCGAC 459994 Query 80378 GCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCG 80437 | || | ||||| || || ||||| || ||||||||| || |||||||||| | Sbjct 459995 GTGAGTAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAG 460054 Query 80438 TGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT 80497 | || || ||||| || | || | | || || || | || ||||| ||||| | Sbjct 460055 TTGAAGCGGTTGGCATGGGCGCCACGAGTAAGGAGTTGCGGACACCATGCTTTTTGATCT 460114 Query 80498 CCTC---GCGCAAATCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTC 80549 | | | | || | ||| | |||| | || || ||||||||| Sbjct 460115 CAGCTTTGAGGCTGTCCCAGTCCCAGAGATCAGTTGGA-----GTCACGTTCCACATGTC 460169 Query 80550 GTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGT 80609 | |||||| || |||| ||| | || || ||| | | || || || || | | Sbjct 460170 ATACTGCAAAATCCCCTGGGACACGGGCGAGCCCTCATAACTCGAATAGGGACCTTGCTC 460229 Query 80610 CTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTT 80669 ||||| ||||||||||| | | || || ||||| || ||| ||||||| | Sbjct 460230 TTTGGCAAGCTCACACGAAGCTGTCAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGAT 460289 Query 80670 GTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGC 80729 ||||| || |||| ||| |||||| | || | || | ||| | || || Sbjct 460290 GTTCAGCATACGAGCCTCTGGAGAGTCGAATGGCAGCCGCAGAGCGAGGAAAGCATCGGC 460349 Query 80730 CAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT-CG-GCCTCC 80787 || ||||| || |||| |||| || ||||| | | |||| | | | || ||||| Sbjct 460350 AAGACCCTGCACACCGACACCGATAGGACGGTGTCTCATGTT--ACTGTTACGTGCCTCT 460407 Query 80788 GGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 || | ||||| |||| | ||||||| ||||| |||||| ||| || || Sbjct 460408 GGTACAGGGTAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCGAACGACATGGCGGGTG 460467 Query 80848 ACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACA------AATGCCGGAAGG 80901 || ||||| || |||| |||||| ||| | | | | ||| || | || || Sbjct 460468 ACCTCATGCAGCTTCTTGAAGTCGTATTCGCCACGCATGACATCGACAAAGGTTGGCAGA 460527 Query 80902 CTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCC 80961 ||| || |||| || ||||| || ||||| || | | || |||| | ||| || Sbjct 460528 GCCAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCG 460587 Query 80962 GTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAA 81021 ||||| | || || || || ||||||||||||||||| |||| ||||||| Sbjct 460588 GTGCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAA 460647 Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 |||||||||||| |||| | || | || |||||| ||||| || || ||||| | | Sbjct 460648 GCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATAC 460707 Query 81082 CAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAA 81141 || | || | || || || || ||| || | | || || |||| Sbjct 460708 CACAGCTTCTGAGCACGGATGGTCTCACGACCACGGCCCTCCTTCTCGTATTTCTCGTAT 460767 Query 81142 GCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATC 81201 | || |||| | |||| | || | |||| | || || || || || | Sbjct 460768 AGGGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAG 460827 Query 81202 AGGTGCCAGTCGGTGTCGTTCTCTACAGC---CTTCATGAAAGCGTCAGGGATCCAGAGG 81258 || ||| | | |||| | || | |||||||| ||||| |||| | Sbjct 460828 AGTGTCCA---CATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAA 460884 Query 81259 GCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317 || ||| || || || ||| || ||| || | ||| ||||| |||||| || || Sbjct 460885 GCATAGAAGAGATCACGAGCA-CGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAG 460943 Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG--- 81374 || | | ||||| |||||||||||||| || || | ||||| | || ||| Sbjct 460944 CCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTT 461003 Query 81375 ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434 ||||||||| | || || || || || || | | |||||||||||||| || | Sbjct 461004 GTTGCCACCCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAG 461063 Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGAT 81494 ||| | || ||||| ||||| | || ||| || | || || | ||| | Sbjct 461064 ACCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAA---TGCGG-- 461118 Query 81495 TGAA-----AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTC 81549 || | |||||||||||||| | |||||||||| |||||| || | || Sbjct 461119 TGTACGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTG 461178 Query 81550 TCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGA 81609 || || || ||||| ||||| || | ||||| || | | ||| ||| || | ||| Sbjct 461179 TCGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGC 461238 Query 81610 GGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGAC 81669 || | ||| ||||| ||||| || || | |||||| |||| || || ||| Sbjct 461239 GGCGACGGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGAC 461298 Query 81670 ATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACA 81729 || ||| || || || || | | ||| || |||||||| || || | || ||| Sbjct 461299 ATGTAGTCGTAAGTCTCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCGCAACA 461358 Query 81730 CGCATAAACATGTACTGGGGCGTCTC 81755 ||||||| ||||| ||| || |||| Sbjct 461359 CGCATAATCATGTGCTGTGGTCTCTC 461384 >seq2 Length=1312579 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||| || | ||| || ||||| || || ||||||||||| || |||||||| ||||| Sbjct 554678 AATTCATAGCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTC 554619 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| ||||| | || || |||||||| ||||| || || |||||||| Sbjct 554618 GGATACGATCGACAATGTGAAGACCAAGATCCAGGACAAAGAGGGTATCCCACCAGACCA 554559 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || |||||||| ||||| || || |||| || |||||| ||||| || Sbjct 554558 GCAGCGCTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTAAGCGACTACAA 554499 Query 27585 TGTCCAAAAGG 27595 |||| |||| Sbjct 554498 CATCCAGAAGG 554488 >seq9 Length=905162 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || |||||||| ||| Sbjct 60770 GACAAGGAGGGTATTCCACCCGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAACTTGAG 60829 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || | | ||||| || |||||||||| || || || || || ||| | Sbjct 60830 GATGGCCGCACTTTGTCCGACTACAACATCCAAAAGGAGTCGACGCTGCACCTTGTCCTT 60889 Query 27619 CGTCTTCGCGGTGG 27632 || ||||| ||||| Sbjct 60890 CGACTTCGTGGTGG 60903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307783701040