Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq23 163 7e-35 seq2 120 7e-22 seq10 109 1e-18 seq9 107 4e-18 >seq23 Length=461238 Score = 163 bits (180), Expect = 7e-35 Identities = 171/222 (77%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||| |||||||| ||||| ||||| ||||| || || || || | || || Sbjct 205085 CGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTA 205026 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| ||||| || || |||||||| ||||| || ||||| || || | || Sbjct 205025 CGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCC 204966 Query 211014 TCCTTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| || ||| || || ||||| |||||||| ||||| || ||||| || Sbjct 204965 TCCTTGTCCTGAAT-TTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACCTCAAG 204907 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || |||||||| || || | |||||| Sbjct 204906 CGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| ||||| ||||| || || | || || | ||||| Sbjct 205304 AGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCC 205245 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| ||||| || |||||||| | ||| || || || || |||| || |||||||| Sbjct 205244 TCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 205185 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || ||||| ||| |||||| || || ||||||||| Sbjct 205184 TGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTC 205125 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | ||||| Sbjct 205124 TTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || || | || || | || ||||| ||||| || || |||||||| Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || || | || ||||||||||| ||||| || || || ||| Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| || || |||||||| ||||| ||||| || || Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 204487 >seq2 Length=1312579 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || ||||| | |||||||| ||||||||||| || ||||| Sbjct 554490 TTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATC 554549 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||| || || | || || |||||||||||||| ||||| || ||| Sbjct 554550 AAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTCACATTGTCG 554609 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || || || ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 554610 ATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 554668 >seq10 Length=848763 Score = 109 bits (120), Expect = 1e-18 Identities = 197/284 (69%), Gaps = 8/284 (3%) Strand=Plus/Plus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGG 178142 |||| | ||| || ||||||||||| | ||||| || || ||||| ||||||| Sbjct 460613 TTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAA---GCGTCCTTGTAGAGCATGAAGG 460669 Query 178143 GCATTCCCAC-CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACA 178201 | ||| ||| ||| | || ||| |||||| || ||| |||| ||| || |||| Sbjct 460670 G-ATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCACAGCTTCTGAGCACGGATG 460728 Query 178202 GTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCA 178261 |||| | || || |||||||| || | ||| || |||| || || || Sbjct 460729 GTCTCACGACCACGGCCCTCCTTCTCGTATTTCTCGTATAGGGCCTCAAACTCTTCGCCG 460788 Query 178262 TAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCC 178321 |||||||| |||| || || || |||||||| |||||||| ||||| ||| | | Sbjct 460789 TAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTGTCCACATACCATTCTGT 460848 Query 178322 TTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 | |||||||||||||| || |||| ||||| | |||||||| Sbjct 460849 TCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCATAGAA 460892 >seq9 Length=905162 Score = 107 bits (118), Expect = 4e-18 Identities = 105/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| ||||||||||| || || ||||| ||||||||||| || || | | || Sbjct 60898 ACGAAGTCGAAGGACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGT 60839 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || |||||||| ||||||||||| || || ||||| || |||| || Sbjct 60838 GCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGAATACC 60779 Query 211013 TTCCTTGTCCTGGA 211026 ||||||| ||||| Sbjct 60778 CTCCTTGT-CTGGA 60766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146549449955