Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq23 134 3e-26
seq9 127 5e-24
seq2 102 2e-16
>seq23
Length=461238
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| ||||| || || ||||| | ||||| || | || || | |||||
Sbjct 205304 AGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCC 205245
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||||||||| | || || || || || |||||||| |||||||||
Sbjct 205244 TCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 205185
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||||||| || || |||||||||| ||| || |||| |||||||||
Sbjct 205184 TGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTC 205125
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | ||||||
Sbjct 205124 TTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093
Score = 132 bits (146), Expect = 1e-25
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || |||||||| ||||| || || ||||| | |||||| || | || |||
Sbjct 205085 CGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTA 205026
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| ||||| || ||||||||||| || || || ||||| || || || ||
Sbjct 205025 CGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCC 204966
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| || || || ||| || |||||||| || || | || || || | |
Sbjct 204965 TCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACCTCAAGC 204906
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || |||| ||| || | ||| | |||||
Sbjct 204905 GTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865
Score = 107 bits (118), Expect = 5e-18
Identities = 118/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594
||||| |||| || ||| | || ||||| ||||| || ||||||||||| || || ||
Sbjct 204641 TTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGC 204582
Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654
||||| || || || || |||||||| || ||||| ||| ||| |||||||||||
Sbjct 204581 TGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCGATGGTGTCG 204522
Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691
|| | || || || | ||||| |||||||| ||||
Sbjct 204521 GACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485
>seq9
Length=905162
Score = 127 bits (140), Expect = 5e-24
Identities = 106/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||||| ||||||||||| || || || || ||||||| ||||| |||| ||||||
Sbjct 60898 ACGAAGTCGAAGGACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGT 60839
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || || ||||| || ||||||||||| || || |||||||| ||||||||
Sbjct 60838 GCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGAATACC 60779
Query 225612 TTCCTTGTCT 225621
|||||||||
Sbjct 60778 CTCCTTGTCT 60769
>seq2
Length=1312579
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| |||||||| ||||| ||||| | || || ||||| || || ||||| ||
Sbjct 554520 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCT 554579
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
||||| |||||||| ||||||| ||||| || || || | ||||| || | |||
Sbjct 554580 TTGTCCTGGATCTTGGTCTTCACATTGTCGATCGTATCCGACGACTCCACCTCAAGGGTG 554639
Query 225676 ATCGTCTTGCCCGT 225689
|| |||||||||||
Sbjct 554640 ATAGTCTTGCCCGT 554653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192525592494698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |