Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq23 134 3e-26 seq9 127 5e-24 seq2 102 2e-16 >seq23 Length=461238 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || || ||||| | ||||| || | || || | ||||| Sbjct 205304 AGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCC 205245 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||||||||| | || || || || || |||||||| ||||||||| Sbjct 205244 TCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 205185 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || |||||||||| ||| || |||| ||||||||| Sbjct 205184 TGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTC 205125 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | |||||| Sbjct 205124 TTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || |||||||| ||||| || || ||||| | |||||| || | || ||| Sbjct 205085 CGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTA 205026 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| ||||| || ||||||||||| || || || ||||| || || || || Sbjct 205025 CGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCC 204966 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || || || ||| || |||||||| || || | || || || | | Sbjct 204965 TCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACCTCAAGC 204906 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||| ||| || | ||| | ||||| Sbjct 204905 GTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Score = 107 bits (118), Expect = 5e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| |||| || ||| | || ||||| ||||| || ||||||||||| || || || Sbjct 204641 TTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGC 204582 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || || || || |||||||| || ||||| ||| ||| ||||||||||| Sbjct 204581 TGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCGATGGTGTCG 204522 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 || | || || || | ||||| |||||||| |||| Sbjct 204521 GACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485 >seq9 Length=905162 Score = 127 bits (140), Expect = 5e-24 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| ||||||||||| || || || || ||||||| ||||| |||| |||||| Sbjct 60898 ACGAAGTCGAAGGACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGT 60839 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| || ||||||||||| || || |||||||| |||||||| Sbjct 60838 GCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGAATACC 60779 Query 225612 TTCCTTGTCT 225621 ||||||||| Sbjct 60778 CTCCTTGTCT 60769 >seq2 Length=1312579 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| ||||| | || || ||||| || || ||||| || Sbjct 554520 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCT 554579 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||||||| ||||| || || || | ||||| || | ||| Sbjct 554580 TTGTCCTGGATCTTGGTCTTCACATTGTCGATCGTATCCGACGACTCCACCTCAAGGGTG 554639 Query 225676 ATCGTCTTGCCCGT 225689 || ||||||||||| Sbjct 554640 ATAGTCTTGCCCGT 554653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525592494698