Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq8 127 2e-24 >seq8 Length=997024 Score = 127 bits (140), Expect = 2e-24 Identities = 234/341 (69%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 27384 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 27443 ||||||||| |||| || ||||||||||| || | || |||||| ||| || | Sbjct 376790 GGGGTTCCACGCGCTCAGGATGATGCGCCGATCGTACGGCTTGTTCTTGAGCTTATCGAT 376731 Query 27444 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC--TACCCTCATGTCCGTGTAC 27501 ||| ||||| ||||| ||| ||||| || || || | | ||| |||| Sbjct 376730 CACGTCCGCGAGCTGGTCCACACCCTGCCCCGTATAATCCGTATGCGC--GTCGACGTAC 376673 Query 27502 TCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 27561 || |||||||| || | ||| ||||| || || || || || ||||| |||||||| ||| Sbjct 376672 TCCGCTCCGAAGTGACGCCACTGGAAACCATATACGGGACCGAGGTCGCCCTCTTCTCTG 376613 Query 27562 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 27621 ||| ||| || | ||| | || |||| | || ||| ||||||||||||| | Sbjct 376612 TGCCCGAGACCGTTGGCGTCGAGGAACTCTCGGCTCCCATTGCCGTCCCAGATCTTGATG 376553 Query 27622 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 27681 |||| || |||||| ||| ||| || || ||| | |||||| |||||||| | Sbjct 376552 CCCTGTTCTGAGAGCGGTTTCGAGGACGTCGAGCCTGCTATGAACCAGAGCAGCTCTGCA 376493 Query 27682 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 | ||| || || || | |||||||||||| ||||| Sbjct 376492 ATGACTGCGCGGAGGAACACGCGCTTGGTCGTGAGAAGGGG 376452 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 ||||||| ||| || || | ||||||||| || |||| || ||||||||||| || Sbjct 377126 GGGAAAGTCTCTCGGTTCGCGCTCGAGCTGCACGTTGAGCGCCTCGACGTGATCCAGATA 377067 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 ||||| ||||| |||| |||||| ||| || || || || |||||| || Sbjct 377066 CACGTGTGCGTCGCCCATGGTGTGCGTCAACGTGCCGGGAATCAGGTCGCAGACGTGGGC 377007 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 | ||||| ||| || | | ||| ||||||||| || || || || || |||||||| Sbjct 377006 GAGCATGTGCGTCAGCAACGCGTACGAGGCGATGTTGAACGGCACGCCTAGGCCCATGTC 376947 Query 27285 CCCCGACCTCTGGTAGAG 27302 | ||||| ||| || || Sbjct 376946 GCACGACCGCTGATACAG 376929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505547263577