Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq8 127 2e-24
>seq8
Length=997024
Score = 127 bits (140), Expect = 2e-24
Identities = 234/341 (69%), Gaps = 4/341 (1%)
Strand=Plus/Minus
Query 27384 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 27443
||||||||| |||| || ||||||||||| || | || |||||| ||| || |
Sbjct 376790 GGGGTTCCACGCGCTCAGGATGATGCGCCGATCGTACGGCTTGTTCTTGAGCTTATCGAT 376731
Query 27444 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC--TACCCTCATGTCCGTGTAC 27501
||| ||||| ||||| ||| ||||| || || || | | ||| ||||
Sbjct 376730 CACGTCCGCGAGCTGGTCCACACCCTGCCCCGTATAATCCGTATGCGC--GTCGACGTAC 376673
Query 27502 TCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 27561
|| |||||||| || | ||| ||||| || || || || || ||||| |||||||| |||
Sbjct 376672 TCCGCTCCGAAGTGACGCCACTGGAAACCATATACGGGACCGAGGTCGCCCTCTTCTCTG 376613
Query 27562 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 27621
||| ||| || | ||| | || |||| | || ||| ||||||||||||| |
Sbjct 376612 TGCCCGAGACCGTTGGCGTCGAGGAACTCTCGGCTCCCATTGCCGTCCCAGATCTTGATG 376553
Query 27622 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 27681
|||| || |||||| ||| ||| || || ||| | |||||| |||||||| |
Sbjct 376552 CCCTGTTCTGAGAGCGGTTTCGAGGACGTCGAGCCTGCTATGAACCAGAGCAGCTCTGCA 376493
Query 27682 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722
| ||| || || || | |||||||||||| |||||
Sbjct 376492 ATGACTGCGCGGAGGAACACGCGCTTGGTCGTGAGAAGGGG 376452
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164
||||||| ||| || || | ||||||||| || |||| || ||||||||||| ||
Sbjct 377126 GGGAAAGTCTCTCGGTTCGCGCTCGAGCTGCACGTTGAGCGCCTCGACGTGATCCAGATA 377067
Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224
||||| ||||| |||| |||||| ||| || || || || |||||| ||
Sbjct 377066 CACGTGTGCGTCGCCCATGGTGTGCGTCAACGTGCCGGGAATCAGGTCGCAGACGTGGGC 377007
Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284
| ||||| ||| || | | ||| ||||||||| || || || || || ||||||||
Sbjct 377006 GAGCATGTGCGTCAGCAACGCGTACGAGGCGATGTTGAACGGCACGCCTAGGCCCATGTC 376947
Query 27285 CCCCGACCTCTGGTAGAG 27302
| ||||| ||| || ||
Sbjct 376946 GCACGACCGCTGATACAG 376929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369505547263577
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |