Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10 226 4e-54 >seq10 Length=848763 Score = 226 bits (250), Expect = 4e-54 Identities = 1306/2071 (63%), Gaps = 59/2071 (3%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || ||||| || |||| ||| || | | |||||| ||||||||||| ||||| || ||| Sbjct 459622 GTGAACTGGATGGGAGCAGAGGCAGCCTGTGTACGCAGATAGTACATGCCAGTCTTGAGA 459681 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || || |||| || |||||||||| || | ||| | || || || Sbjct 459682 CCGAGCTTCCAGCCAGCGAAATGCATGGAGGTGATCTTGCCCATCGTTGGTTCCTTCATG 459741 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 || || || | ||||| ||| || ||||| || || | ||| || ||||| | || Sbjct 459742 TGGATGTTGAGAGACTGGGATTGGTCAATGAACGCGCCACGATCGGCGGCCATCTGGATG 459801 Query 76962 A--TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | ||| || | |||||||| | || ||| | | | ||| ||||||||||||| Sbjct 459802 ACATGGCGTT--GGCTTATTTCCCAGACCGTCTTGTACAATGCTTTAATATCATCTGGAA 459859 Query 77020 GGTTTGTATTT---TGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCAT 77076 ||||| | | ||||| |||||||| || | || || ||||| |||| ||| Sbjct 459860 TGTTTGGAATGCGCTGAATCGAACCACCCTCCGCAATGATGCGGTTCTTCATATTGTCAG 459919 Query 77077 TCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTC 77136 |||||| | | || | | || | || | |||||| || | || || || | Sbjct 459920 ACCACAAACCCATGTCAACGAGATCTTTGAGCAACCAAGGATTGACGACCTGGAACTCGC 459979 Query 77137 CAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTC 77196 | | | || | ||| | ||| || || ||||||||| || | | || ||||| | Sbjct 459980 CGGCGAGCACGCGACGTGAGTAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTAC 460039 Query 77197 CCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGAC 77256 ||| || |||| ||| ||||| |||||||| || ||||| | ||| || | || || Sbjct 460040 CCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCACGAGTAAGGAGTTGCGGACAC 460099 Query 77257 CATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACAT 77316 |||| || |||| | | |||| || | ||| ||||| ||||| | || || | Sbjct 460100 CATGCTTTTTGATCTCAGCTTTGAGGCTGTCCCAGTCCCAGAGATCAGTTGGAGTCACGT 460159 Query 77317 CCCAAAGATCGTATTGTAGAATTCCGTT----ACTAGCATATGATCCATTATATGTTTCA 77372 ||| | || || || | ||| || | || || || || | ||| | | Sbjct 460160 TCCACATGTCATACTGCAAAATCCCCTGGGACACGGGC----GAGCCCTCATAACTCGAA 460215 Query 77373 TAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGT 77431 || || |||| || ||| || || ||||| ||| || || ||| || || || Sbjct 460216 TAGGGACCTTGCTCTTTG-GCAAGCTCACACGAAGCTGTCAGAGCGGCGTGGTATATGGT 460274 Query 77432 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAG 77491 ||| || || | | || || | || || | || || || | | | Sbjct 460275 TTCAAAGATTTGGATGTTCAGCATACGAGCCTCTGGAGAGTCGAATGGCAGCCGCAGAGC 460334 Query 77492 AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 77551 | || ||||| || | ||||| || || | ||| ||||| | |||||| | || Sbjct 460335 GAGGAAAGCATCGGCAAGACCCTGCACACCGACACCGATAGGACGGTGTCTCATGTT--- 460391 Query 77552 AATTTTA---GCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608 | | ||| || ||||| | ||| || | |||||||| || || || || | || | Sbjct 460392 ACTGTTACGTGCCTCTGGTACAGGGTAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCG 460451 Query 77609 AACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATAACAA- 77667 ||| || || || | || || || || || ||| || ||| Sbjct 460452 AACGACATGGCGGGTGACCTCATGCAGCTTCTTGAAGTCGTATTCGCCACGCATGACATC 460511 Query 77668 ---ACATGTT--CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC 77722 | | ||| || ||| | ||| || | ||||| || || ||||| | | | | Sbjct 460512 GACAAAGGTTGGCAGAGCCAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGT 460571 Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 || | || |||||||| || || || | ||| || ||||| |||| ||||| Sbjct 460572 GTACTCAATGATCTCGGTGCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTT 460631 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 |||||| ||||| | |||||| || || || || ||| | || || || |||||| Sbjct 460632 GCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGC 460691 Query 77843 TTCGATAATAGATTTCCAGACGACTCTAGCTTTT-ATCATAGATTTGTATCGC------- 77894 | | ||| | || || || ||||| | | || ||| || || | Sbjct 460692 CTGAAGAATGG-----CATACCAC---AGCTTCTGAGCACGGATG-GTCTCACGACCACG 460742 Query 77895 -CTCTCTCTTTCATATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCC 77951 | ||| | || |||| ||||| ||| ||||| || || || | ||||| | Sbjct 460743 GCCCTCCTTCTCGTATTTCTCGTATAGGGCC--TCAAACTCTTCGCCGTAGACATCGGCG 460800 Query 77952 AATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTC 78011 | ||||| |||||| || || | | || ||| ||||| | | |||||||||| Sbjct 460801 AGGCCAGGTGCTTCATTGGGACAGAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTC 460860 Query 78012 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTT 78071 || || |||||||| |||| | |||| || ||||| || | | | ||||| || Sbjct 460861 ATGAACAGATCAGGCGTCCACAAAGCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTA 460920 Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 || ||||| | || || | | | ||| |||| ||||||||| || || || Sbjct 460921 CCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAA 460980 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 || || | | | || || || || || || |||||||| | ||||| |||||| || Sbjct 460981 ATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCGAGCGGTGGCATCG 461040 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTT 78251 || || | |||||| ||||| | |||||| ||||| || || || ||| ||| || Sbjct 461041 TAGACACGCAACATAGGAATTAGACCGTTGGATGTGCCGTTGGTACCACCAATGTACGAA 461100 Query 78252 CCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 ||| | || ||||| | | | || || || || || |||| || || | | Sbjct 461101 CCAGTCGCACGAATGCGGTGTACGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATA 461160 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || || | || |||||||| |||||||| ||||| ||| |||| | | || Sbjct 461161 GCACAGGTCTTGAGCGTGTCGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGG 461220 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 || ||| || | || | || || |||||||| | || ||||| || || Sbjct 461221 AAGCAGGAGGAGAGCTGCGGCGACGGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGT 461280 Query 78432 GTAAACCA-TTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATT 78489 || || | || ||| | |||| | ||| || ||||| || || ||||| || Sbjct 461281 GTGAAGTACTTATTCGACATGTAG-TCGTAAGTCTCAATGGCACTCTCAATGTCTTCACC 461339 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 | || || || ||||| |||||||| | ||| ||||| ||||| || || ||| || Sbjct 461340 G-TGTATGCCAACCGCAACACGCATAATCATGTGCTGTGGTCTCTCTGCCACCTTGCCAT 461398 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | ||| | | ||| || | ||||| ||||| || |||||||| | ||| |||| Sbjct 461399 TGATTCGGAGAAGGTAGGACCTCTCCAATGTTTTGAAGCCAAAATACTGGTAGTTGAAGT 461458 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGA 78669 | | ||||||| || | || || || | || || || | | |||| ||| | Sbjct 461459 CACGGTCGTAAACGATGGCCGAGTTCAGCTCGTCCGCGTGCTTCATGATGATAT-CAT-A 461516 Query 78670 C--AGTAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAA 78727 | ||| | || || ||||| | | || ||||| || || |||||||| | | Sbjct 461517 CGTAGTCTTCGAGATCATAGGGCAGTGCTTGCCGTTTTTTGGGTTGACATAGTTGTAGAG 461576 Query 78728 ATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTAT 78787 ||| || || || | |||| | ||||| |||| |||||| || || ||||| ||||| Sbjct 461577 ATCATCGATGACTGCCGAAAATTGCTTTTTAGTTTGCTTGTGAAGGTTCGATACGGCTAT 461636 Query 78788 TCTTGCAGCTAGAATAGCATAATCAGGATGT 78818 | |||||| || | ||| || || |||||| Sbjct 461637 ACGTGCAGCGAGCACAGCGTAGTCTGGATGT 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665613206880