Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10 194 2e-44 >seq10 Length=848763 Score = 194 bits (214), Expect = 2e-44 Identities = 590/902 (65%), Gaps = 16/902 (2%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| || || || | ||||| | | ||||| |||||| ||||| | | || | Sbjct 460774 TCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTGTC 460833 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 ||| ||||| | | ||| |||||||| || |||||||| |||| | |||| || Sbjct 460834 CACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCATAGAAG 460893 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| || | | ||||| || || ||||| | || || | | | | Sbjct 460894 AGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAAA 460953 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 || |||| ||||||||| || || || || || | | |||| || || || || || ||| Sbjct 460954 ATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCC 461013 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | ||||| || ||| || || || | |||||| ||||| | ||||| ||| Sbjct 461014 TGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGAT 461073 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATAT----TACTAATAGATAG 76875 || || || || ||| ||| || ||| |||||||| ||| ||| Sbjct 461074 GTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACGTTCAGA--- 461130 Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 || || || || || | || || || | ||||||| || | ||||| |||||||| Sbjct 461131 -CCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGCC 461189 Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995 |||||| || || ||| |||| | | || || ||| || | || | || Sbjct 461190 CTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGCGT 461249 Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA-TTTTTCAGAAAGTAGATTGT 77054 || |||||||||| || ||||| || || ||||| | || ||| | |||| | || Sbjct 461250 GCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG-TCGT 461308 Query 77055 ATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 | || ||||| | || || || || | || || || || || |||||||| | | Sbjct 461309 AAGTCTCAATGGCACTCTCAATGTCTTCACCG-TGTATGCCAACCGCAACACGCATAATC 461367 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || ||||| |||| ||| | ||| ||| ||| | | ||| || | ||||| Sbjct 461368 ATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCCAAT 461427 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGT 77233 ||||| || |||||||| | ||| ||||| | ||||||| || |||| || || Sbjct 461428 GTTTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTCGTAAACGATGGCCGAGTTCAGC 461487 Query 77234 TTGTCCTTATATTTGGTAACAATATCCATGAC--AGTGGTAGAAATAATTGGAGATCGTA 77291 | |||| | || | | |||| ||| || ||| | || || || || | | Sbjct 461488 TCGTCCGCGTGCTTCATGATGATAT-CAT-ACGTAGTCTTCGAGATCATAGGGCAGTGCT 461545 Query 77292 TTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGttttt 77351 | || ||||| || || |||||||| | | || || || || | |||| | |||| Sbjct 461546 TGCCGTTTTTTGGGTTGACATAGTTGTAGAGATCATCGATGACTGCCGAAAATTGCTTTT 461605 Query 77352 ttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGAT 77411 | |||| |||||| || |||||||||||||| | ||||| || | || ||||| |||| Sbjct 461606 TAGTTTGCTTGTGAAGGTTCGATACGGCTATACGTGCAGCGAGCACAGCGTAGTCTGGAT 461665 Query 77412 GT 77413 || Sbjct 461666 GT 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931129413440