Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq23 125 2e-23 seq10 102 2e-16 seq9 93.3 1e-13 >seq23 Length=461238 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||||||||| ||||| || ||||| || | | ||| | |||||| Sbjct 205076 AGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCT 205017 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| || | ||||||||| | | ||| || ||||| || Sbjct 205016 TCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 204957 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||||| | || | | | || || ||| || ||||| || || || Sbjct 204956 TGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTC 204897 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||||| |||||| Sbjct 204896 TTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || ||||| ||||| ||||| |||||||| || | | || | Sbjct 205311 GAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCG 205252 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| | | |||||| || | | || || || Sbjct 205251 ACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTC 205192 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || || ||| | || | ||||||| || ||||| || || Sbjct 205191 CTTGTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGT 205132 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||||||| | ||||| Sbjct 205131 GATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 >seq10 Length=848763 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 115629 TTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGG 115688 |||||||| | ||||| ||||||| || ||||| ||||| | || || |||||| Sbjct 460892 TTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTTGAACAGAATGGTATGTGG 460833 Query 115689 AGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAG 115748 | ||||| |||||||||||||| ||||| || | ||||| || || |||||||||| Sbjct 460832 ACACTCTTCTGTCCCAATGAAGCACCTGGCCTCGCCGATGTCTACGGCGAAGAGTTTGAG 460773 Query 115749 AATCTTTACGAAAGGTACGAGAAAGAGGG 115777 || ||||| | |||||||| ||||| Sbjct 460772 GCCCTATACGAGAAATACGAGAAGGAGGG 460744 >seq9 Length=905162 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| |||||||| || || || ||||| |||||||||||||| |||| ||||| | Sbjct 60894 AGTCGAAGGACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGG 60835 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || |||||||||||||| | ||||||||| | | || || ||| Sbjct 60834 CCATCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCC 60775 Query 152007 TTTTCTTGA 152015 || ||| || Sbjct 60774 TTGTCTGGA 60766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815374518257