Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23 154 4e-32 seq2 116 9e-21 seq9 87.8 4e-12 >seq23 Length=461238 Score = 154 bits (170), Expect = 4e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||| || ||||| || || || Sbjct 204868 CAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACGCTTGAGGTCGAGTCATCTGAT 204927 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| |||||||| || ||| ||||||||||| || || ||||| || |||||||| Sbjct 204928 ACCATCGATAACGTCAAGACCAAA-ATTCAGGACAAGGAGGGCATCCCACCAGACCAGCA 204986 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || || |||||||| || ||||||||||||||||| | ||||| | || || || | Sbjct 204987 GCGCCTGATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACTCTGTCTGACTACAATAT 205046 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || ||||| ||||| Sbjct 205047 TCAAAAGGAGTCTACTCTGCACCTTGT 205073 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||||||||| ||||||||||| || || ||| ||||||| Sbjct 205096 CAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCAGAC 205155 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || |||||||| ||||| || || || || || || ||||| Sbjct 205156 ACGATTGACAATGTGAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAGCAG 205215 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || || || ||||| | || || | || || ||| | Sbjct 205216 CGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACAACATT 205275 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || ||||| |||| Sbjct 205276 CAAAAGGAGTCGACTCTGCA-CTTG 205299 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||||||||| || || ||||||||||| || || || Sbjct 204487 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGACC 204546 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || ||||| || |||||||| || || |||||||| || ||| Sbjct 204547 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCTGGTAAA 204606 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || | ||||| |||| || ||| | || || Sbjct 204607 CAGCTCGAAGACGGCCGCACTCTGTCCGACTACAACATTCAGAA 204650 >seq2 Length=1312579 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || ||||| || || || |||||||| |||||||| || || || ||| Sbjct 554668 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACGATC 554609 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || || || ||||| ||||||||||| || ||||| || |||||||| || | Sbjct 554608 GACAATGTGAAGACCAAGATCCAGGACAAAGAGGGTATCCCACCAGACCAGCAGCGCTTG 554549 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||||| |||||||| | || || ||| || ||| |||| || Sbjct 554548 ATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTAAGCGACTACAACATCCAGAA 554490 >seq9 Length=905162 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || || |||||||| || |||||||||||||| || || || || Sbjct 60770 GACAAGGAGGGTATTCCACCCGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAACTTGAG 60829 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | ||| | |||| || ||| ||||||| || || || ||||| ||||| Sbjct 60830 GATGGCCGCACTTTGTCCGACTACAACATCCAAAAGGAGTCGACGCTGCACCTTGT 60885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725539830198