Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq23 154 4e-32
seq2 116 9e-21
seq9 87.8 4e-12
>seq23
Length=461238
Score = 154 bits (170), Expect = 4e-32
Identities = 160/207 (77%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||||| || ||||| || ||||| || ||||| || || ||
Sbjct 204868 CAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACGCTTGAGGTCGAGTCATCTGAT 204927
Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|||||||| |||||||| || ||| ||||||||||| || || ||||| || ||||||||
Sbjct 204928 ACCATCGATAACGTCAAGACCAAA-ATTCAGGACAAGGAGGGCATCCCACCAGACCAGCA 204986
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
|| || |||||||| || ||||||||||||||||| | ||||| | || || || |
Sbjct 204987 GCGCCTGATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACTCTGTCTGACTACAATAT 205046
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
||||| || || || ||||| |||||
Sbjct 205047 TCAAAAGGAGTCTACTCTGCACCTTGT 205073
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| || ||||||||||| ||||||||||| || || ||| |||||||
Sbjct 205096 CAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCAGAC 205155
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || |||||||| ||||| || || || || || || |||||
Sbjct 205156 ACGATTGACAATGTGAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAGCAG 205215
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || || || || ||||| | || || | || || ||| |
Sbjct 205216 CGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACAACATT 205275
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| || || || ||||| ||||
Sbjct 205276 CAAAAGGAGTCGACTCTGCA-CTTG 205299
Score = 125 bits (138), Expect = 2e-23
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||||||||| || || ||||||||||| || || ||
Sbjct 204487 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGACC 204546
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || ||||| || |||||||| || || |||||||| || |||
Sbjct 204547 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCTGGTAAA 204606
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || | ||||| |||| || ||| | || ||
Sbjct 204607 CAGCTCGAAGACGGCCGCACTCTGTCCGACTACAACATTCAGAA 204650
>seq2
Length=1312579
Score = 116 bits (128), Expect = 9e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
|||||||| || ||||| || || || |||||||| |||||||| || || || |||
Sbjct 554668 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACGATC 554609
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || || || ||||| ||||||||||| || ||||| || |||||||| || |
Sbjct 554608 GACAATGTGAAGACCAAGATCCAGGACAAAGAGGGTATCCCACCAGACCAGCAGCGCTTG 554549
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || ||||| |||||||| | || || ||| || ||| |||| ||
Sbjct 554548 ATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTAAGCGACTACAACATCCAGAA 554490
>seq9
Length=905162
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| || || || || || |||||||| || |||||||||||||| || || || ||
Sbjct 60770 GACAAGGAGGGTATTCCACCCGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAACTTGAG 60829
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||||| | ||| | |||| || ||| ||||||| || || || ||||| |||||
Sbjct 60830 GATGGCCGCACTTTGTCCGACTACAACATCCAAAAGGAGTCGACGCTGCACCTTGT 60885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203725539830198
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |