Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq23 129 5e-25
seq2 91.5 1e-13
seq9 89.7 5e-13
>seq23
Length=461238
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||||| ||| || ||||| || |||||| ||||| || ||||| ||
Sbjct 205091 CCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 205032
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || |||||||| || || ||||| ||||||||||| ||||| | ||
Sbjct 205031 AGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGG 204972
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| |||| | | ||| | | || || ||||| ||
Sbjct 204971 ATGCCCTCCTTGTCC-TGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGAC 204913
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | ||| || || || || ||||| ||||| ||||| ||||||||
Sbjct 204912 CTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865
Score = 105 bits (116), Expect = 6e-18
Identities = 125/167 (75%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||||||||| |||||||| || ||||| |||| |||||||| || || ||||| |||
Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591
Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794
|||||||| ||||| | || | || |||||||||| ||| | || | | ||| | |
Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATCTTGGTCTTAACATTGTC 204532
Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCA 41840
| |||||| |||||| ||||| | || || || || || ||||
Sbjct 204531 GATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485
>seq2
Length=1312579
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/182 (72%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||| |||||||| | || || ||||||||||| || || |
Sbjct 554488 CCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGA 554547
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
||| |||||| ||||| | || | | ||| |||||| ||| || |||| || |
Sbjct 554548 TCAAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTC-ACATTG 554606
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | || || |||||||||||| | || || || || ||||| || ||||| |||
Sbjct 554607 TCGATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACG 554666
Query 41852 AA 41853
||
Sbjct 554667 AA 554668
>seq9
Length=905162
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || |||||||| |||||| || ||||| ||||||||
Sbjct 60903 CCACCACGAAGTCGAAGGACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGAC 60844
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || || || |||||||||||||| || || ||||| ||||| | |||
Sbjct 60843 AAAGTGCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGA 60784
Query 41756 ACGCTCTCCTTGTC 41769
| | |||||||||
Sbjct 60783 ATACCCTCCTTGTC 60770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301879180400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |