Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq18890 150 4e-31 seq17 129 1e-24 >seq18890 Length=446397 Score = 150 bits (166), Expect = 4e-31 Identities = 317/469 (68%), Gaps = 8/469 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||||| || |||||||| | | | ||||| ||||| | || ||| ||| Sbjct 160501 TTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 160442 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | ||||||| ||||| ||| ||| | ||||||||||| | | || |||||| Sbjct 160441 GCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAG 160382 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 ||||| ||| ||||||||||| || || | | |||| || ||| || | | Sbjct 160381 CTCATCTCTCGTGACGAGGGTCTTCA-CACCGACTTCGCTTGTCTGCTGTTCTCTCACTT 160323 Query 230352 CCAGAACAAGCTACCATTCGAG---ACGGTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 |||||| | || | || || ||| || | || | || || || || | | Sbjct 160322 ---GAACAACCGCCCCAGCAAGCAGACTGTCCAAGACATTGTCACCGATGCTGTCAATAT 160266 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 || | |||||| | ||| ||| | || ||| |||| | |||||||||||| || Sbjct 160265 TGAGCAAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGCTACTCT 160206 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| |||||||| || ||||| || |||||| | | || || || || ||||||| Sbjct 160205 CATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAACGAGAA 160146 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 || ||||| ||| ||||| || | || |||||| |||||| ||| || ||||| Sbjct 160145 GGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGAC 160086 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| ||||||||| ||| || |||| | ||||||| ||| Sbjct 160085 CAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGTCATG 160037 Score = 125 bits (138), Expect = 2e-23 Identities = 288/430 (67%), Gaps = 8/430 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||||| || |||||||| | | | ||||| ||||| | || ||| ||| Sbjct 409129 TTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 409188 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | ||||||| ||||| ||| ||| | ||||||||||| | | || |||||| Sbjct 409189 GCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAG 409248 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 ||||| ||| ||||||||||| || || | | |||| || ||| || | | Sbjct 409249 CTCATCTCTCGTGACGAGGGTCTTCA-CACCGACTTCGCTTGTCTGCTGTTCTCTCACTT 409307 Query 230352 CCAGAACAAGCTACCATTCGAG---ACGGTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 |||||| | || | || || ||| || | || | || || || || | Sbjct 409308 ---GAACAACCGCCCCAGCAAGCAGACTGTCCAAGATATTGTCACCGATGCTGTCACTAT 409364 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 ||| |||||||| | ||| ||| |||| ||| | || |||||||||||||| || Sbjct 409365 CGAGCAGGAGTTCCTGACTGAGGCTCTTCCCTGTGGTCTGCTTGGCATGAACGCTACTCT 409424 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| |||||||| || ||||| || |||||| | | || || || || ||||||| Sbjct 409425 CATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAACGAGAA 409484 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 || ||||| ||| ||||| || | || |||||| |||||| ||| || ||||| Sbjct 409485 GGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGAC 409544 Query 230589 CAACTTCTTC 230598 |||||||||| Sbjct 409545 CAACTTCTTC 409554 >seq17 Length=218 Score = 129 bits (142), Expect = 1e-24 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 |||||||||||| || ||| |||||||| || ||||| || |||||| | | || Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || || || ||||||| || ||||| ||| ||||| || | || |||||| |||| Sbjct 158 GCCCTCGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATT 99 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || ||| || ||||||||||||||||| ||||||||| ||| || |||| | ||||| Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39 Query 230632 GTGATG 230637 || ||| Sbjct 38 GTCATG 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057443407817030