Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq18890 150 4e-31
seq17 129 1e-24
>seq18890
Length=446397
Score = 150 bits (166), Expect = 4e-31
Identities = 317/469 (68%), Gaps = 8/469 (2%)
Strand=Plus/Minus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
|||||| || |||||||| | | | ||||| ||||| | || ||| |||
Sbjct 160501 TTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 160442
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
| ||||||| ||||| ||| ||| | ||||||||||| | | || ||||||
Sbjct 160441 GCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAG 160382
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351
||||| ||| ||||||||||| || || | | |||| || ||| || | |
Sbjct 160381 CTCATCTCTCGTGACGAGGGTCTTCA-CACCGACTTCGCTTGTCTGCTGTTCTCTCACTT 160323
Query 230352 CCAGAACAAGCTACCATTCGAG---ACGGTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408
|||||| | || | || || ||| || | || | || || || || | |
Sbjct 160322 ---GAACAACCGCCCCAGCAAGCAGACTGTCCAAGACATTGTCACCGATGCTGTCAATAT 160266
Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468
|| | |||||| | ||| ||| | || ||| |||| | |||||||||||| ||
Sbjct 160265 TGAGCAAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGCTACTCT 160206
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| |||||||| || ||||| || |||||| | | || || || || |||||||
Sbjct 160205 CATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAACGAGAA 160146
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|| ||||| ||| ||||| || | || |||||| |||||| ||| || |||||
Sbjct 160145 GGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGAC 160086
Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
|||||||||||| ||||||||| ||| || |||| | ||||||| |||
Sbjct 160085 CAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGTCATG 160037
Score = 125 bits (138), Expect = 2e-23
Identities = 288/430 (67%), Gaps = 8/430 (2%)
Strand=Plus/Plus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
|||||| || |||||||| | | | ||||| ||||| | || ||| |||
Sbjct 409129 TTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 409188
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
| ||||||| ||||| ||| ||| | ||||||||||| | | || ||||||
Sbjct 409189 GCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAG 409248
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351
||||| ||| ||||||||||| || || | | |||| || ||| || | |
Sbjct 409249 CTCATCTCTCGTGACGAGGGTCTTCA-CACCGACTTCGCTTGTCTGCTGTTCTCTCACTT 409307
Query 230352 CCAGAACAAGCTACCATTCGAG---ACGGTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408
|||||| | || | || || ||| || | || | || || || || |
Sbjct 409308 ---GAACAACCGCCCCAGCAAGCAGACTGTCCAAGATATTGTCACCGATGCTGTCACTAT 409364
Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468
||| |||||||| | ||| ||| |||| ||| | || |||||||||||||| ||
Sbjct 409365 CGAGCAGGAGTTCCTGACTGAGGCTCTTCCCTGTGGTCTGCTTGGCATGAACGCTACTCT 409424
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| |||||||| || ||||| || |||||| | | || || || || |||||||
Sbjct 409425 CATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAACGAGAA 409484
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|| ||||| ||| ||||| || | || |||||| |||||| ||| || |||||
Sbjct 409485 GGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGAC 409544
Query 230589 CAACTTCTTC 230598
||||||||||
Sbjct 409545 CAACTTCTTC 409554
>seq17
Length=218
Score = 129 bits (142), Expect = 1e-24
Identities = 140/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511
|||||||||||| || ||| |||||||| || ||||| || |||||| | | ||
Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159
Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571
|| || || ||||||| || ||||| ||| ||||| || | || |||||| ||||
Sbjct 158 GCCCTCGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATT 99
Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631
|| ||| || ||||||||||||||||| ||||||||| ||| || |||| | |||||
Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39
Query 230632 GTGATG 230637
|| |||
Sbjct 38 GTCATG 33
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057443407817030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |