Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq18890 91.5 2e-13 >seq18890 Length=446397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/289 (67%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || ||||| || ||| | || ||||| ||||||||||| ||||| Sbjct 160669 ATGTAGGTGTCAATGAGCAGCGAGTAAGTCTCAGAGTGGATGTTCTCCATCATGATCTGG 160728 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| |||||||| || || | | || || || | ||| || || | || Sbjct 160729 AAGCCGTAGAAGCATCGAGCCTCGGGAACCTGGACCTCGGCACTGAAGCGCTCAACGAGG 160788 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||| |||||||| || ||||| || || || | || || ||||| || Sbjct 160789 TTCTCGTTGACGATGCCATCTGAAGCGGCAAAGAAGGCAAGGATGTGTGAGATGAAGTAC 160848 Query 17414 TTTTCGTCCGGTGTAAGAAC-----GCGCCAGTCCTTTAAATCTTTGGATATATCCACTT 17468 ||||| || || || | | |||||| | | ||| ||||| | ||| | | Sbjct 160849 TTTTCATC--GTCATTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCT 160906 Query 17469 CTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||||| |||||| ||| ||| ||||||| || ||||| | |||||| Sbjct 160907 CTTCGGCGGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTTGCCAAAT 160955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517363935025080