Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq18890 91.5 2e-13
>seq18890
Length=446397
Score = 91.5 bits (100), Expect = 2e-13
Identities = 194/289 (67%), Gaps = 7/289 (2%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || || || ||||| || ||| | || ||||| ||||||||||| |||||
Sbjct 160669 ATGTAGGTGTCAATGAGCAGCGAGTAAGTCTCAGAGTGGATGTTCTCCATCATGATCTGG 160728
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| |||||||| || || | | || || || | ||| || || | ||
Sbjct 160729 AAGCCGTAGAAGCATCGAGCCTCGGGAACCTGGACCTCGGCACTGAAGCGCTCAACGAGG 160788
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| ||||| |||||||| || ||||| || || || | || || ||||| ||
Sbjct 160789 TTCTCGTTGACGATGCCATCTGAAGCGGCAAAGAAGGCAAGGATGTGTGAGATGAAGTAC 160848
Query 17414 TTTTCGTCCGGTGTAAGAAC-----GCGCCAGTCCTTTAAATCTTTGGATATATCCACTT 17468
||||| || || || | | |||||| | | ||| ||||| | ||| | |
Sbjct 160849 TTTTCATC--GTCATTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCT 160906
Query 17469 CTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
|||||| |||||| ||| ||| ||||||| || ||||| | ||||||
Sbjct 160907 CTTCGGCGGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTTGCCAAAT 160955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517363935025080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |