Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq18890 91.5 2e-13 >seq18890 Length=446397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||| |||||||| || ||||| || || ||||||||||||||||| | | Sbjct 408932 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 408873 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || | || || || | |||||||| || ||||| || || || ||| Sbjct 408872 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 408813 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA-----GATGTAAGAATATGCC 16676 || || || | ||||| ||||| || ||||| ||| ||| | | | || Sbjct 408812 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCT--TGTTGTTCC 408755 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | || | | ||| || |||| ||| | ||||| | ||||| ||| |||| |||||| Sbjct 408754 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 408695 Query 16737 TTTTATACATTTTCCAAAT 16755 | || ||||||| |||||| Sbjct 408694 TCTTGTACATTTGCCAAAT 408676 Score = 82.4 bits (90), Expect = 8e-11 Identities = 175/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||| |||||||| || ||||| || || ||||||||||||||||| | | Sbjct 160699 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGAACC 160758 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || | || || || | |||||||| || ||||| || || || ||| Sbjct 160759 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 160818 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTT---TCGTCA--GATGTAAGAATATGCC 16676 || || || | ||||| ||||| || ||| |||||| ||| | | | || Sbjct 160819 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCGTCATTGATCT--TGTTGTTCC 160876 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | || | | ||| ||||| | ||| | ||||| | ||||| || ||| |||||| Sbjct 160877 AGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAAGCTTCTGCCT 160936 Query 16737 TTTTATACATTTTCCAAAT 16755 | || ||||||| |||||| Sbjct 160937 TCTTGTACATTTGCCAAAT 160955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511234887152920