Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq18890 91.5 2e-13
>seq18890
Length=446397
Score = 91.5 bits (100), Expect = 2e-13
Identities = 176/259 (68%), Gaps = 7/259 (3%)
Strand=Plus/Minus
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|| ||||| |||||||| || ||||| || || ||||||||||||||||| | |
Sbjct 408932 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 408873
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| || || | || || || | |||||||| || ||||| || || || |||
Sbjct 408872 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 408813
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA-----GATGTAAGAATATGCC 16676
|| || || | ||||| ||||| || ||||| ||| ||| | | | ||
Sbjct 408812 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCT--TGTTGTTCC 408755
Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
| || | | ||| || |||| ||| | ||||| | ||||| ||| |||| ||||||
Sbjct 408754 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 408695
Query 16737 TTTTATACATTTTCCAAAT 16755
| || ||||||| ||||||
Sbjct 408694 TCTTGTACATTTGCCAAAT 408676
Score = 82.4 bits (90), Expect = 8e-11
Identities = 175/259 (68%), Gaps = 7/259 (3%)
Strand=Plus/Plus
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|| ||||| |||||||| || ||||| || || ||||||||||||||||| | |
Sbjct 160699 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGAACC 160758
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| || || | || || || | |||||||| || ||||| || || || |||
Sbjct 160759 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 160818
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTT---TCGTCA--GATGTAAGAATATGCC 16676
|| || || | ||||| ||||| || ||| |||||| ||| | | | ||
Sbjct 160819 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCGTCATTGATCT--TGTTGTTCC 160876
Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
| || | | ||| ||||| | ||| | ||||| | ||||| || ||| ||||||
Sbjct 160877 AGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAAGCTTCTGCCT 160936
Query 16737 TTTTATACATTTTCCAAAT 16755
| || ||||||| ||||||
Sbjct 160937 TCTTGTACATTTGCCAAAT 160955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511234887152920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |