Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 120 4e-22
>seq24749
Length=740841
Score = 120 bits (132), Expect = 4e-22
Identities = 447/698 (64%), Gaps = 12/698 (2%)
Strand=Plus/Minus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || || | || ||||| | | ||| || |||| | || || || |||||
Sbjct 416253 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 416194
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
|||||||| || ||||| || || | || ||||| | | | | |||||| || ||
Sbjct 416193 AAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCG 416134
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| || || |||||| | | | ||||| ||||| || || | ||| |||
Sbjct 416133 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 416074
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | | || || || ||||| || ||||| || | ||| | || ||||| || |
Sbjct 416073 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 416014
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| || | || || || || | || ||||| |||| || || |||
Sbjct 416013 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 415954
Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340
||||||| || | | ||||| || || || ||||| || ||||| | ||
Sbjct 415953 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 415894
Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400
|| || | || || ||||| || || || || |||||| |||||| || || ||
Sbjct 415893 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 415834
Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460
||| |||| || || || || || || || | ||||||||| ||||| ||
Sbjct 415833 CAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTG 415774
Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT----AGCTGA--GTCTATATCCCAT 54514
|| |||| || | || ||||||||||| || ||| | || | | ||||
Sbjct 415773 AAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC-- 415717
Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574
|| || || | |||||||| | ||||||||| || | || | |||||| |
Sbjct 415716 ---CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCG 415660
Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634
| | || || | ||||| |||| || || || ||||| || | ||| |||
Sbjct 415659 TCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAG 415600
Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672
|| || ||||| | ||| | |||| || | |||||
Sbjct 415599 TCACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 415562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593513196296880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |