Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq23861 168 8e-37 seq23293 113 5e-20 seq9218 87.8 2e-12 >seq23861 Length=270256 Score = 168 bits (186), Expect = 8e-37 Identities = 518/795 (65%), Gaps = 77/795 (10%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || |||| ||||| ||||| || | | ||| |||| || |||| | | |||||||| Sbjct 162967 TAAACCGACATCTTCATGGCAATCGTCTTGTGAGGGTCATACCCCTTGACCACAAAGTCC 163026 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG----ATCCTGAGCCT-GGGAA 145651 || ||| | || | || ||||| | |||||||| | ||| |||| ||||| Sbjct 163027 TCTGCCTTCCAGCCGTCAATGTCA-CAGCCCGCCTCGCGCGTCATCTCGAGCAGCGGGAA 163085 Query 145652 AGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710 | | ||| |||| | || ||||| || ||| | || ||||||| |||||||||| Sbjct 163086 ATCTCTGGG--CTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTCGAGGTAGACG 163143 Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCC-CGTGAGGTGGGCGAC 145769 ||||| || |||| ||| || | | | ||| || | || | | || | || | Sbjct 163144 TGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATGCAC-GCGCAAT 163202 Query 145770 CATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCC 145829 ||||| |||||||| | |||||| || || ||||| ||||| || || |||||||| | Sbjct 163203 CATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGACCCATGTCACA 163262 Query 145830 CGAGCGCTGGTACAGCTGGC-----AGGAG------------------------------ 145854 || || ||||| ||||||| ||| | Sbjct 163263 TGACCGTTGGTAGAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCTCCTCGGCGTCCTCGAC 163322 Query 145855 ---AGC--------TCCCCGCCCGCC--------ACGTAGAACTG-GCACAGGAGGTGGC 145894 ||| ||| |||||| ||||| || || ||| | | ||||| Sbjct 163323 CGCAGCATTGCCTCTCCTGGCCCGCGGGTAGGAGACGTAAAATTGAGCAAAC-ATGTGGC 163381 Query 145895 AGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCC 145954 |||||||||| ||||| ||||| |||||||||||| ||| |||||| || | || Sbjct 163382 AGGGCGGCAGCGCCATCTTCTTCAGGTGCGCCGGGTTCCATGCGCTGAGGATGATGCGCC 163441 Query 145955 TGCTC-TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTG--AGCTGGTCCACGCCCT 146011 | || | || || |||||| || | | || ||| |||||||| || || | Sbjct 163442 -GATCGTACGGATTGGTCTTGAGCTTGTGGACAA--TCTCTGCCAGCTGGTCGACACCTT 163498 Query 146012 GCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACC 146071 | ||| ||| || ||||| | || |||||| |||| |||||||||| ||| ||||| | Sbjct 163499 GACCCGTGTAGTCCGTCTTCGCATCAACGTACTCGGCACCGAAGTGCCGCCATTGGAAGC 163558 Query 146072 CGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGT 146131 |||||||||| || ||||| || || | ||| || || | | | ||||||| | Sbjct 163559 CGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGTGAGAGTCCCACGCTGTCGAGGAACT 163618 Query 146132 CCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTC 146189 | || || |||||| ||||||||||||||| ||| |||||| || | | |||| Sbjct 163619 CGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCCTCGCTCAGCGGT--ATGGATGA 163676 Query 146190 CGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTT 146249 |||| ||| | ||||| || ||||| ||| ||| | | |||||| | ||| Sbjct 163677 CGTGCTGCCCTGTACAAACCACAGAAGCTCGGCGACGACGGCGCGAAGGAAGACGCGCTT 163736 Query 146250 GGTGGTCAGCAGGGG 146264 || ||||||||||| Sbjct 163737 CGTCGTCAGCAGGGG 163751 Score = 159 bits (176), Expect = 4e-34 Identities = 516/795 (65%), Gaps = 77/795 (10%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || |||| ||||| ||||| || | | ||| |||| || |||| | | |||||||| Sbjct 129246 TAAACCGACATCTTCATGGCAATCGTCTTGTGAGGGTCATACCCCTTGACCACAAAGTCC 129305 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG----ATCCTGAGCCT-GGGAA 145651 || ||| | || | || ||||| | |||||||| | ||| |||| ||||| Sbjct 129306 TCTGCCTTCCAGCCGTCAATGTCA-CAGCCCGCCTCGCGCGTCATCTCGAGCAGCGGGAA 129364 Query 145652 AGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710 | | ||| |||| | || ||||| || ||| | || ||||||| |||||||||| Sbjct 129365 ATCTCTGGG--CTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTCGAGGTAGACG 129422 Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCC-CGTGAGGTGGGCGAC 145769 ||||| || |||| ||| || | | | ||| || | || | | || | || | Sbjct 129423 TGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATGCAC-GCGCAAT 129481 Query 145770 CATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCC 145829 ||||| |||||||| | |||||| || || ||||| ||||| || || |||||||| | Sbjct 129482 CATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGACCCATGTCACA 129541 Query 145830 CGAGCGCTGGTACAGCTGGCA---------------------------GGAGA------- 145855 || || ||||| |||||||| || | Sbjct 129542 TGACCGTTGGTAGAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCTCCTCGGCGTCCTCGGC 129601 Query 145856 ----------GCTCCCC--GCCCGCC--------ACGTAGAACTG-GCACAGGAGGTGGC 145894 |||| || |||||| ||||| ||||| ||| | | ||||| Sbjct 129602 CGCGGCATTGGCTCTCCTGGCCCGCGGGTAGGAGACGTAAAACTGAGCAAAC-ATGTGGC 129660 Query 145895 AGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCC 145954 |||||||||| ||||| ||||| |||||||||||| ||| |||||| || | || Sbjct 129661 AGGGCGGCAGCGCCATCTTCTTCAGGTGCGCCGGGTTCCATGCGCTGAGGATGATGCGCC 129720 Query 145955 TGCTC-TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTG--AGCTGGTCCACGCCCT 146011 | || | || || |||||| || | | || ||| |||||||| || || | Sbjct 129721 -GATCGTACGGATTGGTCTTGAGCTTGTGGACAA--TCTCTGCCAGCTGGTCGACACCTT 129777 Query 146012 GCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACC 146071 | ||| ||| || ||| | | || || ||| | || |||||||||| ||| ||||| | Sbjct 129778 GTCCCGTGTAGTCCGTCGTCGCATCAACATACTCAGCACCGAAGTGCCGCCATTGGAAGC 129837 Query 146072 CGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGT 146131 |||||||||| || ||||| || || | ||| || || | | | ||||||| | Sbjct 129838 CGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGTGAGAGTCCCACGCTGTCGAGGAACT 129897 Query 146132 CCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTC 146189 | || || |||||| ||||||||||||||| ||| |||||| || | | |||| Sbjct 129898 CGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCCTCGCTCAGCGGT--ATGGACGA 129955 Query 146190 CGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTT 146249 |||| ||| | |||||| | ||||| ||| ||| | | |||||| | ||| Sbjct 129956 CGTGCTGCCCTGTACGAACCACAAAAGCTCGGCGACGACGGCGCGAAGGAAGACGCGCTT 130015 Query 146250 GGTGGTCAGCAGGGG 146264 || ||||||||||| Sbjct 130016 TGTCGTCAGCAGGGG 130030 >seq23293 Length=363 Score = 113 bits (124), Expect = 5e-20 Identities = 223/322 (69%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || |||| ||||| ||||| || | | ||| |||| || |||| | | |||||||| Sbjct 10 TAAACCGACATCTTCATGGCAATCGTCTTGTGAGGGTCATACCCCTTGACCACAAAGTCC 69 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG----ATCCTGAGCCT-GGGAA 145651 || ||| | || | || ||||| | |||||||| | ||| |||| ||||| Sbjct 70 TCTGCCTTCCAGCCGTCAATGTCA-CAGCCCGCCTCGCGCGTCATCTCGAGCAGCGGGAA 128 Query 145652 AGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710 | | ||| |||| | || ||||| || ||| | || ||||||| |||||||||| Sbjct 129 ATCTCTGGG--CTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTCGAGGTAGACG 186 Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGTGGGCGAC 145769 ||||| || |||| ||| || | | | |||| ||| | | | || | || | Sbjct 187 TGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATG-CACGCGCAAT 245 Query 145770 CATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCC 145829 ||||| |||||||| | |||||| || || ||||| ||||| || || |||||||| | Sbjct 246 CATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGACCCATGTCACA 305 Query 145830 CGAGCGCTGGTACAGCTGGCAG 145851 || || ||||| ||||||||| Sbjct 306 TGACCGTTGGTAGAGCTGGCAG 327 >seq9218 Length=140 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 146047 GCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGC 146106 || |||||||||| ||| ||||| ||||||||||| || ||||| || || | ||| Sbjct 140 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 81 Query 146107 CCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC- 146165 || || | | | ||||||| || || || |||||| ||||||||||||||| ||| Sbjct 80 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCC 21 Query 146166 -CCTCGC 146171 |||||| Sbjct 20 GCCTCGC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589869675667240