Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq11113 140 3e-28 seq23972 134 1e-26 seq20756 113 4e-20 seq26527 111 1e-19 seq22587 102 7e-17 seq1002 95.1 1e-14 seq24749 89.7 4e-13 seq11514 89.7 4e-13 >seq11113 Length=490148 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| || ||| || |||||| ||||| |||||| Sbjct 77477 GTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCA 77536 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| ||||| || |||||||| || ||||||||||| ||| || || Sbjct 77537 GCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 77596 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||| ||||||| || | || |||||||||||||| Sbjct 77597 ACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTC 77656 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 77657 TTGACAAAGATCTGCAT 77673 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| || || |||||||| || || ||||| ||||||| Sbjct 77237 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCG 77296 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | || || ||||| || |||||||| || |||||||||||| Sbjct 77297 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGG 77356 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | || | ||||| || | || | || || Sbjct 77357 ATCTTGGACTTGACGTTGTCGATCGTGTCGGATGAT-TCGACTTCCAATGTGATAGTCTT 77415 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || ||||| Sbjct 77416 ACCGGTGAGTGTCTTGACGAAGATTTGCAT 77445 >seq23972 Length=267833 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| || ||| || |||||| ||||| |||||| Sbjct 225263 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCA 225204 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||||||||| || |||||||| || ||||||||||| ||| || || Sbjct 225203 GCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 225144 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| ||||| | || | || ||||||||||| || Sbjct 225143 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTC 225084 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 225083 TTGACAAAGATCTGCAT 225067 Score = 118 bits (130), Expect = 9e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || ||||| |||||| ||||| Sbjct 225042 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTG 224983 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || || ||||| || |||||||| |||||||||||||| || || Sbjct 224982 CTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 224923 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | |||| |||||||| | ||||||||| | ||| | || |||||||| Sbjct 224922 CGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 224863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| || || |||||||| || || ||||| ||||| Sbjct 225503 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCA 225444 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | || || ||||| ||||||||||| ||||||||||||||| Sbjct 225443 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGG 225384 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | || | ||||| || | || | || || Sbjct 225383 ATCTTGGACTTCACATTGTCGATCGTGTCGGATGAT-TCGACTTCCAATGTGATAGTCTT 225325 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || ||||| Sbjct 225324 ACCGGTGAGCGTCTTGACGAAGATTTGCAT 225295 >seq20756 Length=5129 Score = 113 bits (124), Expect = 4e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 ||||| || || |||||||| ||| || ||||| |||||| ||||| || |||||| Sbjct 4897 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 4956 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | || || ||||| || |||||||| |||||||||||||| || || ||||| Sbjct 4957 AAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5016 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | |||| |||||||| | ||||||||| | ||| | || |||||||| Sbjct 5017 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5066 >seq26527 Length=223112 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||| ||| | |||||| |||||| Sbjct 222594 CACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 222653 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| || ||||| || ||||| || |||||||||||||| Sbjct 222654 AAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTG 222713 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 222714 GATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 222773 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || || || || || ||||||||| Sbjct 222774 GCCCGTGAGGGTCTTGACGAAGATCTGCATG 222804 >seq22587 Length=423 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||| ||| | |||||| |||||| Sbjct 295 CACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 236 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| | || || ||||| || ||||| || |||||||||||||| Sbjct 235 AAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTG 176 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 175 GATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 116 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || || || || || ||||||||| Sbjct 115 GCCCGTGAGGGTCTTGACGAAGATCTGCATG 85 >seq1002 Length=198801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || |||||| |||||||||||| || || ||| | || Sbjct 112547 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 112606 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || ||||| || |||||||||||||| || || || || | || Sbjct 112607 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 112666 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||| | | ||| ||||| | ||| | || ||||| ||||| || || || ||| Sbjct 112667 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAA 112726 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || |||||| |||||| ||||| || || ||| | || Sbjct 118103 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 118162 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || || || || |||||||||||||| || || || || | ||| Sbjct 118163 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 118222 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||| | | ||| ||||| | ||| | || ||||| ||||| || || || ||| Sbjct 118223 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAA 118282 >seq24749 Length=740841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| || || |||||||||||||| || || | | || | || |||||| | | Sbjct 417098 GGTTGACGACCTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAG 417039 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| | ||||||||||| || ||||||| || | |||||||||||| ||||| Sbjct 417038 GCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCA 416979 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 | | | | ||| | ||||| | | || || | || || | ||| |||||||| Sbjct 416978 CGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGCTCTTGAGGTCGGCCCAGTCCC 416919 Query 133402 ACAG 133405 | || Sbjct 416918 AAAG 416915 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| || || |||||||||||||| || || | | || | || |||||| | | Sbjct 446906 GGTTGACGACCTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAG 446965 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| | ||||||||||| || ||||||| || | |||||||||||| ||||| Sbjct 446966 GCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCA 447025 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 | | | | ||| | ||||| | | || || | || || | ||| |||||||| Sbjct 447026 CGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGCTCTTGAGGTCGGCCCAGTCCC 447085 Query 133402 ACAG 133405 | || Sbjct 447086 AAAG 447089 >seq11514 Length=5315 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| || || |||||||||||||| || || | | || | || |||||| | | Sbjct 17 GGTTGACGACCTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAG 76 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| | ||||||||||| || ||||||| || | |||||||||||| ||||| Sbjct 77 GCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCA 136 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 | | | | ||| | ||||| | | || || | || || | ||| |||||||| Sbjct 137 CGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGCTCTTGAGGTCGGCCCAGTCCC 196 Query 133402 ACAG 133405 | || Sbjct 197 AAAG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433681927104052