Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq23972 120 3e-22 seq11113 120 3e-22 >seq23972 Length=267833 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| ||||| || | | ||| | |||||||||| || |||||| || || ||||| Sbjct 225528 CTACTGTCCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTA 225469 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 |||| ||| || || |||| || |||||||| |||||||| || || ||||| || || Sbjct 225468 GTCAGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATC 225409 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129 || || | || ||||||||| ||| || || | | | | ||||||| || Sbjct 225408 GGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGA 225349 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || | ||||| || || || || |||||||| || ||||||||||| Sbjct 225348 TTCGACTTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 225295 >seq11113 Length=490148 Score = 120 bits (132), Expect = 3e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| ||||| || | | ||| | |||||||||| || |||||| || || ||||| Sbjct 77212 CTACTGTCCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTA 77271 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 |||| ||| || || | || || |||||||| |||||||| || || ||||| ||||| Sbjct 77272 GTCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTC 77331 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCG 43128 || || | | ||||||||| ||| || |||| ||| | | | ||||||| | Sbjct 77332 GGGAGGGATACCCTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCGATCGTGTCGGATG 77390 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || | ||||| || || || || || ||||| || ||||||||||| Sbjct 77391 ATTCGACTTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 77445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571616884874680