Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq23972 123 2e-23 seq26527 122 6e-23 seq22587 122 6e-23 seq11113 113 3e-20 seq1002 102 5e-17 seq20756 98.7 6e-16 >seq23972 Length=267833 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| ||| |||| || | ||||||||| |||||| Sbjct 225485 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAA 225426 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||| || ||| || | || ||||||||| ||||| ||| | || | Sbjct 225425 ATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTG 225366 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| |||| |||||||| |||| ||||| || || |||||||| || || || Sbjct 225365 TCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACG 225306 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 225305 AAGATTTGCAT 225295 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||||||||||| ||| | || Sbjct 225278 AGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCC 225219 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| ||||| |||||| || | | ||||||||| Sbjct 225218 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 225159 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | |||||||| Sbjct 225158 TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTC 225099 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || |||||||||||||| Sbjct 225098 TTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || ||||| ||||||||||||||| Sbjct 225065 CCACCGCGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 225006 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| |||||||| || ||||| |||||| || Sbjct 225005 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 224946 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | || ||||| Sbjct 224945 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACC 224886 Query 34343 TCCACCGTGATGGTTTTGCCGGTGA 34367 || | |||||||| |||||||||| Sbjct 224885 TCAAGGGTGATGGTCTTGCCGGTGA 224861 >seq26527 Length=223112 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || || ||||| |||||||||||||| Sbjct 222577 CCACCACGCAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 222636 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || ||||| |||||| ||| Sbjct 222637 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGG 222696 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | |||| ||| || || Sbjct 222697 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 222756 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 222757 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 222803 >seq22587 Length=423 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || || ||||| |||||||||||||| Sbjct 312 CCACCACGCAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 253 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || ||||| || ||||| |||||| ||| Sbjct 252 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGG 193 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | |||| ||| || || Sbjct 192 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 133 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 132 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 86 >seq11113 Length=490148 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||||||||| ||| | || Sbjct 77462 AGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCC 77521 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || ||||| ||||| |||||| || | | ||||||||| Sbjct 77522 TCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 77581 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | |||||||| Sbjct 77582 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTC 77641 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||| || |||||||||||||| Sbjct 77642 TTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 77673 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| || | || || | ||||||||| |||||| Sbjct 77255 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAA 77314 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||| |||||| || | | ||||||||| ||||| ||| | | | Sbjct 77315 ATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTG 77374 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| |||| |||||||| |||| ||||| || || |||||||| || || || Sbjct 77375 TCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACG 77434 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 77435 AAGATTTGCAT 77445 >seq1002 Length=198801 Score = 102 bits (112), Expect = 5e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||||||||| ||| | || || | ||||||||| |||||||| Sbjct 112547 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 112606 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||| |||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 112607 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 112666 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | |||| || || || || | |||||||| ||||| || || || || || || Sbjct 112667 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 112725 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||||| ||| | || || | ||||||||| |||||||| Sbjct 118103 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 118162 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||| ||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 118163 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 118222 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | |||| || || || || | |||||||| ||||| || || || || || || Sbjct 118223 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 118281 >seq20756 Length=5129 Score = 98.7 bits (108), Expect = 6e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| | || || | ||||||||| |||||| Sbjct 4900 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAA 4959 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||| |||||| || | || ||||||||| ||||| ||| | | | Sbjct 4960 ATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTG 5019 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367 | || | || | || ||||| || | |||||||| |||||||||| Sbjct 5020 TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGA 5068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322961432747360