Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq7780 98.7 2e-15 seq7779 95.1 3e-14 >seq7780 Length=140480 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || ||||| || ||||||||||| || |||||||||||||| || | | | Sbjct 132575 TCTACGGCCCCCCCGGCACGGGCAAGACGTCGACGATCCTGGCGCTGGCACGGCGCATCT 132634 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 ||| | |||| || | || ||||| ||||| ||||| || ||||| ||||| Sbjct 132635 ACGGCCCCGAGAACGTGCGGCAGATGGTGCTGGAGCTCAACGCATCCGACGACCGCGGCA 132694 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTTC 254168 | ||||| || ||||| |||||||||| ||| Sbjct 132695 TCGACGTGGTGCGCGAGCAGATCAAGACGTTC 132726 >seq7779 Length=522023 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || ||||| || ||||||||||| || |||||||||||||| || | | | Sbjct 5444 TCTACGGCCCCCCCGGCACGGGCAAGACGTCGACGATCCTGGCGCTGGCGCGGCGCATCT 5385 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 ||| | |||| || | || ||||| || || ||||| || ||||| ||||| Sbjct 5384 ACGGCCCCGAGAACGTGCGGCAGATGGTGCTGGAACTCAACGCGTCCGACGACCGCGGCA 5325 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTTC 254168 | ||||| || ||||| |||||||||| ||| Sbjct 5324 TCGACGTGGTGCGCGAGCAGATCAAGACATTC 5293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073380071935808