Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq27938 87.8 4e-12 seq24749 87.8 4e-12 >seq27938 Length=10276 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/150 (73%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || ||||||||||| |||| |||||| || || | | ||| | |||||||||||| Sbjct 9830 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 9889 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCCATGAAGAG 94523 ||||| ||||||||| || | ||| | || |||| || | || ||||||||| Sbjct 9890 CTCGTTGGGGCACATGAGAGTCCA---GTCGCCGTTCTTCTCGACACGCTTCATGAAGAG 9946 Query 94524 ATCAGATACCCAGATAGCTGGGAAAAGATC 94553 ||| | | ||| | || |||||||||| Sbjct 9947 ATCGGGGATCCACAGGGCCAGGAAAAGATC 9976 >seq24749 Length=740841 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/150 (73%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || ||||||||||| |||| |||||| || || | | ||| | |||||||||||| Sbjct 416305 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 416246 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCCATGAAGAG 94523 ||||| ||||||||| || | ||| | || |||| || | || ||||||||| Sbjct 416245 CTCGTTGGGGCACATGAGAGTCCA---GTCGCCGTTCTTCTCGACACGCTTCATGAAGAG 416189 Query 94524 ATCAGATACCCAGATAGCTGGGAAAAGATC 94553 ||| | | ||| | || |||||||||| Sbjct 416188 ATCGGGGATCCACAGGGCCAGGAAAAGATC 416159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989227959737355