Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq27938 87.8 4e-12
seq24749 87.8 4e-12
>seq27938
Length=10276
Score = 87.8 bits (96), Expect = 4e-12
Identities = 110/150 (73%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466
||| || ||||||||||| |||| |||||| || || | | ||| | ||||||||||||
Sbjct 9830 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 9889
Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCCATGAAGAG 94523
||||| ||||||||| || | ||| | || |||| || | || |||||||||
Sbjct 9890 CTCGTTGGGGCACATGAGAGTCCA---GTCGCCGTTCTTCTCGACACGCTTCATGAAGAG 9946
Query 94524 ATCAGATACCCAGATAGCTGGGAAAAGATC 94553
||| | | ||| | || ||||||||||
Sbjct 9947 ATCGGGGATCCACAGGGCCAGGAAAAGATC 9976
>seq24749
Length=740841
Score = 87.8 bits (96), Expect = 4e-12
Identities = 110/150 (73%), Gaps = 6/150 (4%)
Strand=Plus/Minus
Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466
||| || ||||||||||| |||| |||||| || || | | ||| | ||||||||||||
Sbjct 416305 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 416246
Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCCATGAAGAG 94523
||||| ||||||||| || | ||| | || |||| || | || |||||||||
Sbjct 416245 CTCGTTGGGGCACATGAGAGTCCA---GTCGCCGTTCTTCTCGACACGCTTCATGAAGAG 416189
Query 94524 ATCAGATACCCAGATAGCTGGGAAAAGATC 94553
||| | | ||| | || ||||||||||
Sbjct 416188 ATCGGGGATCCACAGGGCCAGGAAAAGATC 416159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989227959737355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |