Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq24749 149 8e-31 seq28027 86.0 8e-12 seq18890 86.0 8e-12 >seq24749 Length=740841 Score = 149 bits (164), Expect = 8e-31 Identities = 452/696 (65%), Gaps = 12/696 (2%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||| || |||| | || || || ||||| || Sbjct 416251 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAA 416192 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||| || ||||| || || | || ||||| | | | | |||||| || || Sbjct 416191 GAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCGTG 416132 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||||| Sbjct 416131 GTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGC 416072 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | || || || ||||| || ||||| || | ||| | || ||||| || | || Sbjct 416071 AAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGAC 416012 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| || | || |||||||| | || ||||| |||| || || ||| | Sbjct 416011 GCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGT 415952 Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 |||||| || | | ||||| || || || ||||| || ||||| | || || Sbjct 415951 GGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 415892 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 || | ||||| ||||| ||||| ||||| ||||| |||||| || || || || Sbjct 415891 GGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCA 415832 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 | |||| || ||| || || || || || | ||||||||| ||||| || || Sbjct 415831 GGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTGAA 415772 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCCATTG 63754 |||| || | || |||||||||||||| ||| | || | | |||| Sbjct 415771 GAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC---- 415717 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 || || || | |||||||| | ||||||||| || | || |||| ||| || Sbjct 415716 -CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTC 415658 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 | || | | ||||| |||| || || || ||||| || | ||| ||||| Sbjct 415657 AAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 415598 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || ||||| | ||| |||| | |||| ||||| Sbjct 415597 ACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 415562 >seq28027 Length=10271 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||| ||||| ||| ||| ||||||||||| | | || | ||||| || Sbjct 5101 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 5160 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| ||||| ||||| || ||||| || ||||| ||||| | ||| Sbjct 5161 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 5220 Query 33693 GAAAAGAAGATTCCTTCTAC 33712 |||||||| || || || Sbjct 5221 CTGAAGAAGATACCCTCAAC 5240 >seq18890 Length=446397 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||| ||||| ||| ||| ||||||||||| | | || | ||||| || Sbjct 160332 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 160391 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| ||||| ||||| || ||||| || ||||| ||||| | ||| Sbjct 160392 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 160451 Query 33693 GAAAAGAAGATTCCTTCTAC 33712 |||||||| || || || Sbjct 160452 CTGAAGAAGATACCCTCAAC 160471 Score = 86.0 bits (94), Expect = 8e-12 Identities = 175/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || || ||||| || |||||||| |||| |||||| | || | Sbjct 408932 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 408873 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | || || || || | | || || || || || ||||| || ||| Sbjct 408872 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 408813 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 34053 || || || | | ||| || || || ||||| || || | || || |||| Sbjct 408812 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 408755 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || | || ||| ||||||| ||| | ||||| | ||||| || || |||||||||| Sbjct 408754 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 408695 Query 34114 TTTTATACATATTCCAGAT 34132 | || ||||| | ||| || Sbjct 408694 TCTTGTACATTTGCCAAAT 408676 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||| ||||| ||| ||| ||||||||||| | | || | ||||| || Sbjct 409298 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 409239 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| ||||| ||||| || ||||| || ||||| ||||| | ||| Sbjct 409238 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 409179 Query 33693 GAAAAGAAGATTCCTTCTAC 33712 |||||||| || || || Sbjct 409178 CTGAAGAAGATACCCTCAAC 409159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629596526149680