Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 149 8e-31
seq28027 86.0 8e-12
seq18890 86.0 8e-12
>seq24749
Length=740841
Score = 149 bits (164), Expect = 8e-31
Identities = 452/696 (65%), Gaps = 12/696 (2%)
Strand=Plus/Minus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| || || | || ||||| | | ||| || |||| | || || || ||||| ||
Sbjct 416251 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAA 416192
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
|||||| || ||||| || || | || ||||| | | | | |||||| || ||
Sbjct 416191 GAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCGTG 416132
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||| || || |||||| | | | ||||| ||||| || || | ||| |||||
Sbjct 416131 GTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGC 416072
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | | || || || ||||| || ||||| || | ||| | || ||||| || | ||
Sbjct 416071 AAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGAC 416012
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| | ||| || | || |||||||| | || ||||| |||| || || ||| |
Sbjct 416011 GCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGT 415952
Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580
|||||| || | | ||||| || || || ||||| || ||||| | || ||
Sbjct 415951 GGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 415892
Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640
|| | ||||| ||||| ||||| ||||| ||||| |||||| || || || ||
Sbjct 415891 GGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCA 415832
Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700
| |||| || ||| || || || || || | ||||||||| ||||| || ||
Sbjct 415831 GGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTGAA 415772
Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCCATTG 63754
|||| || | || |||||||||||||| ||| | || | | ||||
Sbjct 415771 GAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC---- 415717
Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814
|| || || | |||||||| | ||||||||| || | || |||| ||| ||
Sbjct 415716 -CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTC 415658
Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874
| || | | ||||| |||| || || || ||||| || | ||| |||||
Sbjct 415657 AAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 415598
Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910
|| ||||| | ||| |||| | |||| |||||
Sbjct 415597 ACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 415562
>seq28027
Length=10271
Score = 86.0 bits (94), Expect = 8e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || ||| ||||| ||| ||| ||||||||||| | | || | ||||| ||
Sbjct 5101 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 5160
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || || || ||||| ||||| ||||| || ||||| || ||||| ||||| | |||
Sbjct 5161 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 5220
Query 33693 GAAAAGAAGATTCCTTCTAC 33712
|||||||| || || ||
Sbjct 5221 CTGAAGAAGATACCCTCAAC 5240
>seq18890
Length=446397
Score = 86.0 bits (94), Expect = 8e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || ||| ||||| ||| ||| ||||||||||| | | || | ||||| ||
Sbjct 160332 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 160391
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || || || ||||| ||||| ||||| || ||||| || ||||| ||||| | |||
Sbjct 160392 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 160451
Query 33693 GAAAAGAAGATTCCTTCTAC 33712
|||||||| || || ||
Sbjct 160452 CTGAAGAAGATACCCTCAAC 160471
Score = 86.0 bits (94), Expect = 8e-12
Identities = 175/259 (68%), Gaps = 7/259 (3%)
Strand=Plus/Minus
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || || ||||| || || ||||| || |||||||| |||| |||||| | || |
Sbjct 408932 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 408873
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| || || | || || || || | | || || || || || ||||| || |||
Sbjct 408872 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 408813
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 34053
|| || || | | ||| || || || ||||| || || | || || ||||
Sbjct 408812 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 408755
Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| || | || ||| ||||||| ||| | ||||| | ||||| || || ||||||||||
Sbjct 408754 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 408695
Query 34114 TTTTATACATATTCCAGAT 34132
| || ||||| | ||| ||
Sbjct 408694 TCTTGTACATTTGCCAAAT 408676
Score = 86.0 bits (94), Expect = 8e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || ||| ||||| ||| ||| ||||||||||| | | || | ||||| ||
Sbjct 409298 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 409239
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || || || ||||| ||||| ||||| || ||||| || ||||| ||||| | |||
Sbjct 409238 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 409179
Query 33693 GAAAAGAAGATTCCTTCTAC 33712
|||||||| || || ||
Sbjct 409178 CTGAAGAAGATACCCTCAAC 409159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629596526149680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |