Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq23972 96.9 3e-15 seq11113 82.4 8e-11 >seq23972 Length=267833 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || ||||| || |||||||| || ||| || || | || || Sbjct 225276 AACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTC 225217 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || ||||| |||| ||||| || || |||||||| || || || ||||| | Sbjct 225216 AAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC-T 225158 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || || |||||| | ||||||||||| || | |||| Sbjct 225157 GAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCT 225098 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||| ||| || || || || |||||| Sbjct 225097 TGCCGGTCAGCGTCTTGACAAAGATCTGCATA 225066 >seq11113 Length=490148 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || ||||| || |||||||| || ||| || || | || || Sbjct 77464 AACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTC 77523 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| |||| || || || || |||||||| || || || ||||| | Sbjct 77524 AAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC-T 77582 Query 139675 GATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||||||| | ||| ||||| | || | |||| Sbjct 77583 GAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCT 77642 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||| || || || || || |||||| Sbjct 77643 TGCCGGTCAGAGTCTTGACAAAGATCTGCATA 77674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495889875335200