Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 131 2e-25
seq28027 87.8 3e-12
seq18890 87.8 3e-12
>seq24749
Length=740841
Score = 131 bits (144), Expect = 2e-25
Identities = 338/515 (66%), Gaps = 0/515 (0%)
Strand=Plus/Minus
Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950
||||| || |||| || ||||| | | ||| || || | | || || || |||||
Sbjct 416253 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 416194
Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010
|||||||| || ||||| || || | || ||||| | | | | ||||| || ||
Sbjct 416193 AAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCG 416134
Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070
||||| || || |||||| | | | ||||| ||||| || || | ||| |||
Sbjct 416133 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 416074
Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || |
Sbjct 416073 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 416014
Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190
|| | | ||| || | || || || || || || ||||| |||| || || |||
Sbjct 416013 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 415954
Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250
||||||| || | | ||||| || || || ||||| || ||||| | ||
Sbjct 415953 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 415894
Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310
|| || | || || ||||| || || ||||| ||||| |||||| || || ||
Sbjct 415893 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 415834
Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370
||| |||| || || || || || || || | ||||||||| ||||| ||
Sbjct 415833 CAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTG 415774
Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 80405
|| |||| |||| || ||||||||||||||
Sbjct 415773 AAGAATTTGCTGGACATGAGGTTGTACGTCTCAAT 415739
>seq28027
Length=10271
Score = 87.8 bits (96), Expect = 3e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| || ||| ||||| ||| ||| ||||||||||| | | || || ||||||||
Sbjct 5101 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 5160
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| || || || ||||| ||||| ||||| || ||||| || ||||| || || | ||
Sbjct 5161 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 5220
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108
|||||||| || || || | || || || || ||
Sbjct 5221 CTGAAGAAGATACCCTCAACGACCGCGAAAGCGACGAG 5258
>seq18890
Length=446397
Score = 87.8 bits (96), Expect = 3e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| || ||| ||||| ||| ||| ||||||||||| | | || || ||||||||
Sbjct 160332 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 160391
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| || || || ||||| ||||| ||||| || ||||| || ||||| || || | ||
Sbjct 160392 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 160451
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108
|||||||| || || || | || || || || ||
Sbjct 160452 CTGAAGAAGATACCCTCAACGACCGCGAAAGCGACGAG 160489
Score = 87.8 bits (96), Expect = 3e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| || ||| ||||| ||| ||| ||||||||||| | | || || ||||||||
Sbjct 409298 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 409239
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| || || || ||||| ||||| ||||| || ||||| || ||||| || || | ||
Sbjct 409238 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 409179
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108
|||||||| || || || | || || || || ||
Sbjct 409178 CTGAAGAAGATACCCTCAACGACCGCGAAAGCGACGAG 409141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718016678672840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |