Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq24749 131 2e-25 seq28027 87.8 3e-12 seq18890 87.8 3e-12 >seq24749 Length=740841 Score = 131 bits (144), Expect = 2e-25 Identities = 338/515 (66%), Gaps = 0/515 (0%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||||| || |||| || ||||| | | ||| || || | | || || || ||||| Sbjct 416253 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 416194 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 |||||||| || ||||| || || | || ||||| | | | | ||||| || || Sbjct 416193 AAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCG 416134 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||| Sbjct 416133 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 416074 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 416073 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 416014 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | | ||| || | || || || || || || ||||| |||| || || ||| Sbjct 416013 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 415954 Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 ||||||| || | | ||||| || || || ||||| || ||||| | || Sbjct 415953 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 415894 Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310 || || | || || ||||| || || ||||| ||||| |||||| || || || Sbjct 415893 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 415834 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 ||| |||| || || || || || || || | ||||||||| ||||| || Sbjct 415833 CAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTG 415774 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 80405 || |||| |||| || |||||||||||||| Sbjct 415773 AAGAATTTGCTGGACATGAGGTTGTACGTCTCAAT 415739 >seq28027 Length=10271 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || ||| ||||| ||| ||| ||||||||||| | | || || |||||||| Sbjct 5101 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 5160 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| ||||| ||||| || ||||| || ||||| || || | || Sbjct 5161 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 5220 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| || || || | || || || || || Sbjct 5221 CTGAAGAAGATACCCTCAACGACCGCGAAAGCGACGAG 5258 >seq18890 Length=446397 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || ||| ||||| ||| ||| ||||||||||| | | || || |||||||| Sbjct 160332 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 160391 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| ||||| ||||| || ||||| || ||||| || || | || Sbjct 160392 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 160451 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| || || || | || || || || || Sbjct 160452 CTGAAGAAGATACCCTCAACGACCGCGAAAGCGACGAG 160489 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || ||| ||||| ||| ||| ||||||||||| | | || || |||||||| Sbjct 409298 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 409239 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| ||||| ||||| || ||||| || ||||| || || | || Sbjct 409238 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 409179 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| || || || | || || || || || Sbjct 409178 CTGAAGAAGATACCCTCAACGACCGCGAAAGCGACGAG 409141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718016678672840