Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq24749 123 3e-23 seq18890 87.8 2e-12 >seq24749 Length=740841 Score = 123 bits (136), Expect = 3e-23 Identities = 340/519 (66%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||| | | ||| || || | | | || || ||||| Sbjct 416253 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 416194 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || ||||| || || | || ||||| | | | | ||||| || || Sbjct 416193 AAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCG 416134 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||| Sbjct 416133 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 416074 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 416073 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 416014 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | || || || || | || ||||| |||| || || ||| Sbjct 416013 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 415954 Query 72274 CTGGCACGAATATTGCTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 ||||||| || || | | || ||||| || || || ||||| || ||||| | Sbjct 415953 GTGGCACGGAT---GCGA-TGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 415898 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || || || | || || ||||| || || || || |||||| |||||| || || Sbjct 415897 GGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAG 415838 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || ||| |||| || || || || || || || | ||||||||| ||||| Sbjct 415837 GAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTG 415778 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 || || |||| |||| || |||||||||||||| Sbjct 415777 TGTGAAGAATTTGCTGGACATGAGGTTGTACGTCTCAAT 415739 >seq18890 Length=446397 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || |||||||| |||| ||||||| |||| Sbjct 160699 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGAACC 160758 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || | || || || ||| | | || ||||| || || || || || ||| Sbjct 160759 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 160818 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAA 42538 || || || | | ||| || || || ||||| || | || | | || ||||| Sbjct 160819 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCGTCATTGATCTTGTTGTTCCAG 160878 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 || | || ||| || || | ||| | ||||| | ||||| || || ||||||||||| Sbjct 160879 TCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAAGCTTCTGCCTTC 160938 Query 42599 TTATACATATTCCAGAT 42615 || ||||| | ||| || Sbjct 160939 TTGTACATTTGCCAAAT 160955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670903621751560