Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq27938 141 1e-28
seq24749 141 1e-28
seq18890 136 6e-27
seq28027 98.7 1e-15
seq23861 91.5 2e-13
>seq27938
Length=10276
Score = 141 bits (156), Expect = 1e-28
Identities = 332/496 (67%), Gaps = 4/496 (1%)
Strand=Plus/Minus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|| |||||| ||||||||||| || || || |||||| | ||| ||||| | || ||
Sbjct 10105 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 10046
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || || || || | || | ||||| ||| ||| || || |
Sbjct 10045 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTT 9986
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | || | || || || ||| | || ||| | ||||||||||| ||| |
Sbjct 9985 CGCGCTCGCGATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 9926
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
| ||| |||||| || ||||||||| || || || || || | || ||||
Sbjct 9925 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 9866
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162
|| || |||||||||||| |||| | |||||| | | ||| | || ||||
Sbjct 9865 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 9806
Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
| || | || | |||| || ||| | ||| || | ||||||| ||||| || | |
Sbjct 9805 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 9748
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281
| | ||| |||||||||||| | || ||||| |||||||| || | || ||||
Sbjct 9747 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 9688
Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341
| ||||||| |||||||| || ||||| |||||| | | || || ||| || |
Sbjct 9687 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 9628
Query 97342 TTTGCGTTCTGGCATC 97357
| ||| ||||| ||
Sbjct 9627 TCTGCAACCTGGCCTC 9612
>seq24749
Length=740841
Score = 141 bits (156), Expect = 1e-28
Identities = 332/496 (67%), Gaps = 4/496 (1%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|| |||||| ||||||||||| || || || |||||| | ||| ||||| | || ||
Sbjct 416030 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 416089
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || || || || | || | ||||| ||| ||| || || |
Sbjct 416090 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTT 416149
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | || | || || || ||| | || ||| | ||||||||||| ||| |
Sbjct 416150 CGCGCTCGCGATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 416209
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
| ||| |||||| || ||||||||| || || || || || | || ||||
Sbjct 416210 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 416269
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162
|| || |||||||||||| |||| | |||||| | | ||| | || ||||
Sbjct 416270 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 416329
Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
| || | || | |||| || ||| | ||| || | ||||||| ||||| || | |
Sbjct 416330 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 416387
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281
| | ||| |||||||||||| | || ||||| |||||||| || | || ||||
Sbjct 416388 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 416447
Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341
| ||||||| |||||||| || ||||| |||||| | | || || ||| || |
Sbjct 416448 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 416507
Query 97342 TTTGCGTTCTGGCATC 97357
| ||| ||||| ||
Sbjct 416508 TCTGCAACCTGGCCTC 416523
>seq18890
Length=446397
Score = 136 bits (150), Expect = 6e-27
Identities = 209/291 (72%), Gaps = 8/291 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| ||||| | || || || ||||| | ||||||| | ||||||
Sbjct 160955 ATTTGGCAAATGTACAAGAAGGCAGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATCTG 160896
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || |||| ||| | | | | ||| ||| | || || ||
Sbjct 160895 TCCAAGGATCTCCACGACTGGAACAACAAGATCAATGACGATGAAAAGTACTTCATCTCA 160836
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| | ||||||||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 160835 CACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGA-GCG 160777
Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254
||| | ||| | ||| |||| |||| ||| ||||| ||||| ||||| |||||
Sbjct 160776 CTTCAGTGCCGAG--GTCCAGGTTCCCGAGG-CTCGATGCTTCTACGGCTTCCAGATCAT 160720
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
||| |||||| | ||||| || | ||||| || ||||||| |||||
Sbjct 160719 GATGGAGAACATCCACTCTGAGACTTACTCGCTGCTCATTGACACCTACAT 160669
Score = 131 bits (144), Expect = 2e-25
Identities = 208/291 (71%), Gaps = 8/291 (3%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| ||||| |||| ||||| ||||| | ||||||| | |||||
Sbjct 408676 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTA 408735
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||| || |||| ||| | | | | ||| ||| | || || ||
Sbjct 408736 TCTAAGGATCTCCACGACTGGAACAACAAGATCAATGATGATGAAAAGTACTTCATCTCA 408795
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| | ||||||||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 408796 CACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGA-GCG 408854
Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254
||| | ||| | ||| |||| |||| ||| ||||| ||||| ||||| || ||
Sbjct 408855 CTTCAGTGCCGAG--GTCCAGGTTCCTGAGG-CTCGATGCTTCTACGGCTTCCAGATTAT 408911
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
||| |||||| | ||||| || | ||||| || ||||||| |||||
Sbjct 408912 GATGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACAT 408962
Score = 122 bits (134), Expect = 1e-22
Identities = 303/454 (67%), Gaps = 17/454 (4%)
Strand=Plus/Minus
Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465
|||||| | | ||| | | || || || ||||| | ||| ||||| ||||||||
Sbjct 160510 AAGTCTACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGC 160451
Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525
||| || || ||||||| |||||||||||||| || |||||||| || ||||| |
Sbjct 160450 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTC 160391
Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT- 125584
|||||| | || ||||| |||||||| || ||| ||||| || ||| |||||
Sbjct 160390 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTC 160331
Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644
|| | ||| || | | | ||||| | | | ||| ||||||| ||
Sbjct 160330 TCTC-ACT---TG------AACAACCGCCCCAGCAAGCAGACTGTCCAAGACATTGTCAC 160281
Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704
|||||| || | || || |||||||| || || || | || || || || | ||
Sbjct 160280 CGATGCTGTCAATATTGAGCAAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGG 160221
Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764
||||||| | || ||| ||||||| ||||| || ||||| || || || ||
Sbjct 160220 CATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCT---CGT 160164
Query 125765 GTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821
| ||| || ||| ||||||| || | || || || || |||||| | |||
Sbjct 160163 CGCCCTCGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACAT 160104
Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
|| || | || ||||||||||| |||||||||
Sbjct 160103 TTCTCTTGGCGGCAAGACCAACTTCTTCGAGAAG 160070
Score = 109 bits (120), Expect = 8e-19
Identities = 305/462 (66%), Gaps = 25/462 (5%)
Strand=Plus/Plus
Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465
|||||| | | ||| | | || || || ||||| | ||| ||||| ||||||||
Sbjct 409120 AAGTCTACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGC 409179
Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525
||| || || ||||||| |||||||||||||| || |||||||| || ||||| |
Sbjct 409180 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTC 409239
Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT- 125584
|||||| | || ||||| |||||||| || ||| ||||| || ||| |||||
Sbjct 409240 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTC 409299
Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644
|| | ||| || | | | ||||| | | | ||| | ||||| ||
Sbjct 409300 TCTC-ACT---TG------AACAACCGCCCCAGCAAGCAGACTGTCCAAGATATTGTCAC 409349
Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC----GGTCAGCATGA 125700
|||||| || | || || || ||||| || || || | || || |||| ||
Sbjct 409350 CGATGCTGTCACTATCGAGCAGGAGTTCCTGACTGAGGCTCTTCCCTGTGGTC----TGC 409405
Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760
||||||||||| | || ||| ||||||| ||||| || ||||| || || ||
Sbjct 409406 TTGGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCT-- 409463
Query 125761 ACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817
|| | ||| || ||| ||||||| || | || || || || |||||| |
Sbjct 409464 -CGTCGCCCTCGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGA 409522
Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGG 125859
||| || || | || ||||||||||| ||| | ||||||
Sbjct 409523 ACATTTCTCTTGGCGGCAAGACCAACTTCTTCNACCAGAAGG 409564
>seq28027
Length=10271
Score = 98.7 bits (108), Expect = 1e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465
|||||| | | ||| | | || || || ||||| | ||| ||||| ||||||||
Sbjct 5279 AAGTCTACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGC 5220
Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525
||| || || ||||||| |||||||||||||| || |||||||| || ||||| |
Sbjct 5219 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTC 5160
Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584
|||||| | || ||||| |||||||| || ||| ||||| || ||| |||||
Sbjct 5159 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTT 5101
>seq23861
Length=270256
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/225 (71%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
||||| || || || || ||||| ||||| ||| |||||| || | ||||||| ||
Sbjct 129859 GGCGACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCTGAGTATGTTGA- 129801
Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184
||||| ||| ||||| |||| || ||||| || || || |||| | | | ||| |
Sbjct 129800 TGCGACGACGGACTACACGGGACAAGGTGTCGACCAGCTGGCAGAGATTG-TCCACAAGC 129742
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
||||||||||||| ||| || | ||| | | || ||||||| || || | ||
Sbjct 129741 TCAAGACCAATCCGTACGATCGGCGCATCATCCTCAGCGCATGGAACCCGGCGCACCTGA 129682
Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288
| | ||||| || || || || ||| |||||| |||||||||||
Sbjct 129681 AGAAGATGGCGCTGCCGCCCTGCCACATGTTTG-CTCAGTTTTAC 129638
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/225 (71%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
||||| || || || || ||||| ||||| ||| |||||| || || |||| || ||
Sbjct 163580 GGCGACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCCGAGTACGTTGA- 163522
Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184
||||| ||| ||||| ||||||| ||||| || || || |||| | | | ||| |
Sbjct 163521 TGCGAAGACGGACTACACGGGTCAAGGTGTCGACCAGCTGGCAGAGATTG-TCCACAAGC 163463
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
||||||||||||| ||| || | ||| | | || ||||||| || || | ||
Sbjct 163462 TCAAGACCAATCCGTACGATCGGCGCATCATCCTCAGCGCATGGAACCCGGCGCACCTGA 163403
Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288
| | ||||| || || || || ||| ||||| ||||| ||||||
Sbjct 163402 AGAAGATGGCGCTGCCGCCCTGCCACATGTTT-GCTCAATTTTAC 163359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740799078957560
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