Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq27938 141 1e-28 seq24749 141 1e-28 seq18890 136 6e-27 seq28027 98.7 1e-15 seq23861 91.5 2e-13 >seq27938 Length=10276 Score = 141 bits (156), Expect = 1e-28 Identities = 332/496 (67%), Gaps = 4/496 (1%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||||||||| || || || |||||| | ||| ||||| | || || Sbjct 10105 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 10046 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || || | || | ||||| ||| ||| || || | Sbjct 10045 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTT 9986 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | || | || || || ||| | || ||| | ||||||||||| ||| | Sbjct 9985 CGCGCTCGCGATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 9926 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| || ||||||||| || || || || || | || |||| Sbjct 9925 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 9866 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162 || || |||||||||||| |||| | |||||| | | ||| | || |||| Sbjct 9865 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 9806 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | || | |||| || ||| | ||| || | ||||||| ||||| || | | Sbjct 9805 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 9748 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| |||||||||||| | || ||||| |||||||| || | || |||| Sbjct 9747 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 9688 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 | ||||||| |||||||| || ||||| |||||| | | || || ||| || | Sbjct 9687 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 9628 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| ||||| || Sbjct 9627 TCTGCAACCTGGCCTC 9612 >seq24749 Length=740841 Score = 141 bits (156), Expect = 1e-28 Identities = 332/496 (67%), Gaps = 4/496 (1%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||||||||| || || || |||||| | ||| ||||| | || || Sbjct 416030 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 416089 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || || | || | ||||| ||| ||| || || | Sbjct 416090 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTT 416149 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | || | || || || ||| | || ||| | ||||||||||| ||| | Sbjct 416150 CGCGCTCGCGATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 416209 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| || ||||||||| || || || || || | || |||| Sbjct 416210 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 416269 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162 || || |||||||||||| |||| | |||||| | | ||| | || |||| Sbjct 416270 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 416329 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | || | |||| || ||| | ||| || | ||||||| ||||| || | | Sbjct 416330 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 416387 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| |||||||||||| | || ||||| |||||||| || | || |||| Sbjct 416388 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 416447 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 | ||||||| |||||||| || ||||| |||||| | | || || ||| || | Sbjct 416448 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 416507 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| ||||| || Sbjct 416508 TCTGCAACCTGGCCTC 416523 >seq18890 Length=446397 Score = 136 bits (150), Expect = 6e-27 Identities = 209/291 (72%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| | || || || ||||| | ||||||| | |||||| Sbjct 160955 ATTTGGCAAATGTACAAGAAGGCAGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATCTG 160896 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | | | ||| ||| | || || || Sbjct 160895 TCCAAGGATCTCCACGACTGGAACAACAAGATCAATGACGATGAAAAGTACTTCATCTCA 160836 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | ||||||||||||| || ||||| ||||||||||| || || ||||| || Sbjct 160835 CACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGA-GCG 160777 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||| | ||| | ||| |||| |||| ||| ||||| ||||| ||||| ||||| Sbjct 160776 CTTCAGTGCCGAG--GTCCAGGTTCCCGAGG-CTCGATGCTTCTACGGCTTCCAGATCAT 160720 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||| |||||| | ||||| || | ||||| || ||||||| ||||| Sbjct 160719 GATGGAGAACATCCACTCTGAGACTTACTCGCTGCTCATTGACACCTACAT 160669 Score = 131 bits (144), Expect = 2e-25 Identities = 208/291 (71%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| |||| ||||| ||||| | ||||||| | ||||| Sbjct 408676 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTA 408735 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | | | ||| ||| | || || || Sbjct 408736 TCTAAGGATCTCCACGACTGGAACAACAAGATCAATGATGATGAAAAGTACTTCATCTCA 408795 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | ||||||||||||| || ||||| ||||||||||| || || ||||| || Sbjct 408796 CACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGA-GCG 408854 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||| | ||| | ||| |||| |||| ||| ||||| ||||| ||||| || || Sbjct 408855 CTTCAGTGCCGAG--GTCCAGGTTCCTGAGG-CTCGATGCTTCTACGGCTTCCAGATTAT 408911 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||| |||||| | ||||| || | ||||| || ||||||| ||||| Sbjct 408912 GATGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACAT 408962 Score = 122 bits (134), Expect = 1e-22 Identities = 303/454 (67%), Gaps = 17/454 (4%) Strand=Plus/Minus Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 |||||| | | ||| | | || || || ||||| | ||| ||||| |||||||| Sbjct 160510 AAGTCTACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGC 160451 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 ||| || || ||||||| |||||||||||||| || |||||||| || ||||| | Sbjct 160450 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTC 160391 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT- 125584 |||||| | || ||||| |||||||| || ||| ||||| || ||| ||||| Sbjct 160390 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTC 160331 Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 || | ||| || | | | ||||| | | | ||| ||||||| || Sbjct 160330 TCTC-ACT---TG------AACAACCGCCCCAGCAAGCAGACTGTCCAAGACATTGTCAC 160281 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 |||||| || | || || |||||||| || || || | || || || || | || Sbjct 160280 CGATGCTGTCAATATTGAGCAAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGG 160221 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 ||||||| | || ||| ||||||| ||||| || ||||| || || || || Sbjct 160220 CATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCT---CGT 160164 Query 125765 GTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821 | ||| || ||| ||||||| || | || || || || |||||| | ||| Sbjct 160163 CGCCCTCGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACAT 160104 Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || | || ||||||||||| ||||||||| Sbjct 160103 TTCTCTTGGCGGCAAGACCAACTTCTTCGAGAAG 160070 Score = 109 bits (120), Expect = 8e-19 Identities = 305/462 (66%), Gaps = 25/462 (5%) Strand=Plus/Plus Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 |||||| | | ||| | | || || || ||||| | ||| ||||| |||||||| Sbjct 409120 AAGTCTACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGC 409179 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 ||| || || ||||||| |||||||||||||| || |||||||| || ||||| | Sbjct 409180 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTC 409239 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT- 125584 |||||| | || ||||| |||||||| || ||| ||||| || ||| ||||| Sbjct 409240 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTC 409299 Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 || | ||| || | | | ||||| | | | ||| | ||||| || Sbjct 409300 TCTC-ACT---TG------AACAACCGCCCCAGCAAGCAGACTGTCCAAGATATTGTCAC 409349 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC----GGTCAGCATGA 125700 |||||| || | || || || ||||| || || || | || || |||| || Sbjct 409350 CGATGCTGTCACTATCGAGCAGGAGTTCCTGACTGAGGCTCTTCCCTGTGGTC----TGC 409405 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 ||||||||||| | || ||| ||||||| ||||| || ||||| || || || Sbjct 409406 TTGGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCT-- 409463 Query 125761 ACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 || | ||| || ||| ||||||| || | || || || || |||||| | Sbjct 409464 -CGTCGCCCTCGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGA 409522 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGG 125859 ||| || || | || ||||||||||| ||| | |||||| Sbjct 409523 ACATTTCTCTTGGCGGCAAGACCAACTTCTTCNACCAGAAGG 409564 >seq28027 Length=10271 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 |||||| | | ||| | | || || || ||||| | ||| ||||| |||||||| Sbjct 5279 AAGTCTACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGC 5220 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 ||| || || ||||||| |||||||||||||| || |||||||| || ||||| | Sbjct 5219 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTC 5160 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 |||||| | || ||||| |||||||| || ||| ||||| || ||| ||||| Sbjct 5159 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTT 5101 >seq23861 Length=270256 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| || || || || ||||| ||||| ||| |||||| || | ||||||| || Sbjct 129859 GGCGACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCTGAGTATGTTGA- 129801 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184 ||||| ||| ||||| |||| || ||||| || || || |||| | | | ||| | Sbjct 129800 TGCGACGACGGACTACACGGGACAAGGTGTCGACCAGCTGGCAGAGATTG-TCCACAAGC 129742 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 ||||||||||||| ||| || | ||| | | || ||||||| || || | || Sbjct 129741 TCAAGACCAATCCGTACGATCGGCGCATCATCCTCAGCGCATGGAACCCGGCGCACCTGA 129682 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 | | ||||| || || || || ||| |||||| ||||||||||| Sbjct 129681 AGAAGATGGCGCTGCCGCCCTGCCACATGTTTG-CTCAGTTTTAC 129638 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| || || || || ||||| ||||| ||| |||||| || || |||| || || Sbjct 163580 GGCGACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCCGAGTACGTTGA- 163522 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184 ||||| ||| ||||| ||||||| ||||| || || || |||| | | | ||| | Sbjct 163521 TGCGAAGACGGACTACACGGGTCAAGGTGTCGACCAGCTGGCAGAGATTG-TCCACAAGC 163463 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 ||||||||||||| ||| || | ||| | | || ||||||| || || | || Sbjct 163462 TCAAGACCAATCCGTACGATCGGCGCATCATCCTCAGCGCATGGAACCCGGCGCACCTGA 163403 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 | | ||||| || || || || ||| ||||| ||||| |||||| Sbjct 163402 AGAAGATGGCGCTGCCGCCCTGCCACATGTTT-GCTCAATTTTAC 163359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740799078957560