Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq24972 120 3e-22 seq3669 120 3e-22 >seq24972 Length=243428 Score = 120 bits (132), Expect = 3e-22 Identities = 169/230 (73%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCA-GGCCTC--CAGG 99600 ||||| || || | |||||||||||||||||||||||| |||||| ||| || |||| Sbjct 5665 CGCACCGTCAGGCACGTGTTGAGCAGCAGCACGCCGCGGTCCGCCCACGGCGTCAGCAGG 5606 Query 99601 CA-GCCGTGCTGCGGCCGCGGGGTCCCGG---GGAAGTTCTTCTGCACGGCCGCGTAGAT 99656 | ||| || || ||| |||| || || || ||| || || ||| ||| || Sbjct 5605 CCCGCCTTGTTG-GGCGGCGGCGTGAAGGTCGGGTAGTCGCGCTTCAGGGCTATGTACAT 5547 Query 99657 GTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTC--ACGCTGAAGGCCAGGCCGTGG 99714 ||||| |||| || || ||| || || || | ||| |||||| ||||||||| Sbjct 5546 GTTCTTGAGGGACGGGGGCGCCGG--CGTCGGGGCCCGGACGGAGAAGGCGAGGCCGTGG 5489 Query 99715 GCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||| | | ||||||||||||||||||| ||||||||||||||||| Sbjct 5488 GCCTGGTTGATGTTGTGGTAGGGGTCCTGGCCGAGGATGACGACCTTGAC 5439 >seq3669 Length=173888 Score = 120 bits (132), Expect = 3e-22 Identities = 172/234 (74%), Gaps = 20/234 (9%) Strand=Plus/Plus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCA-GGCCTC--CAGG 99600 ||||| || || | |||||||||||||||||||||||| |||||| ||| || |||| Sbjct 55111 CGCACCGTCAGGCACGTGTTGAGCAGCAGCACGCCGCGGTCCGCCCACGGCGTCAGCAGG 55170 Query 99601 CA-GCCGTGCTGCGGCCGCGGGGTCCCGG---GGAAGTTCTTCTGCACGGCCGCGTAGAT 99656 | ||| || || ||| |||| || || || ||| || || ||| ||| || Sbjct 55171 CCCGCCTTGTTG-GGCGGCGGCGTGAAGGTCGGGTAGTCGCGCTTCAGGGCAATGTACAT 55229 Query 99657 GTTCTGGAGG--CTGGG----CGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCC 99710 ||||| |||| | ||| ||| |||| | ||||| ||| |||||| ||||| Sbjct 55230 GTTCTTGAGGGACGGGGGCGCCGGCGTCGG---GGCGCGG---ACGGAGAAGGCGAGGCC 55283 Query 99711 GTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||||||| | | ||||||||||||||||||| ||||||||||||||||| Sbjct 55284 GTGGGCCTGGTTGACGTTGTGGTAGGGGTCCTGGCCGAGGATGACGACCTTGAC 55337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440744438869560