Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_005261.2
Length=137821
Score E
Sequences producing significant alignments: (Bits) Value
seq24972 120 3e-22
seq3669 120 3e-22
>seq24972
Length=243428
Score = 120 bits (132), Expect = 3e-22
Identities = 169/230 (73%), Gaps = 12/230 (5%)
Strand=Plus/Minus
Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCA-GGCCTC--CAGG 99600
||||| || || | |||||||||||||||||||||||| |||||| ||| || ||||
Sbjct 5665 CGCACCGTCAGGCACGTGTTGAGCAGCAGCACGCCGCGGTCCGCCCACGGCGTCAGCAGG 5606
Query 99601 CA-GCCGTGCTGCGGCCGCGGGGTCCCGG---GGAAGTTCTTCTGCACGGCCGCGTAGAT 99656
| ||| || || ||| |||| || || || ||| || || ||| ||| ||
Sbjct 5605 CCCGCCTTGTTG-GGCGGCGGCGTGAAGGTCGGGTAGTCGCGCTTCAGGGCTATGTACAT 5547
Query 99657 GTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTC--ACGCTGAAGGCCAGGCCGTGG 99714
||||| |||| || || ||| || || || | ||| |||||| |||||||||
Sbjct 5546 GTTCTTGAGGGACGGGGGCGCCGG--CGTCGGGGCCCGGACGGAGAAGGCGAGGCCGTGG 5489
Query 99715 GCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764
||||| | | ||||||||||||||||||| |||||||||||||||||
Sbjct 5488 GCCTGGTTGATGTTGTGGTAGGGGTCCTGGCCGAGGATGACGACCTTGAC 5439
>seq3669
Length=173888
Score = 120 bits (132), Expect = 3e-22
Identities = 172/234 (74%), Gaps = 20/234 (9%)
Strand=Plus/Plus
Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCA-GGCCTC--CAGG 99600
||||| || || | |||||||||||||||||||||||| |||||| ||| || ||||
Sbjct 55111 CGCACCGTCAGGCACGTGTTGAGCAGCAGCACGCCGCGGTCCGCCCACGGCGTCAGCAGG 55170
Query 99601 CA-GCCGTGCTGCGGCCGCGGGGTCCCGG---GGAAGTTCTTCTGCACGGCCGCGTAGAT 99656
| ||| || || ||| |||| || || || ||| || || ||| ||| ||
Sbjct 55171 CCCGCCTTGTTG-GGCGGCGGCGTGAAGGTCGGGTAGTCGCGCTTCAGGGCAATGTACAT 55229
Query 99657 GTTCTGGAGG--CTGGG----CGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCC 99710
||||| |||| | ||| ||| |||| | ||||| ||| |||||| |||||
Sbjct 55230 GTTCTTGAGGGACGGGGGCGCCGGCGTCGG---GGCGCGG---ACGGAGAAGGCGAGGCC 55283
Query 99711 GTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764
||||||||| | | ||||||||||||||||||| |||||||||||||||||
Sbjct 55284 GTGGGCCTGGTTGACGTTGTGGTAGGGGTCCTGGCCGAGGATGACGACCTTGAC 55337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440744438869560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |