Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq10668 118 9e-22 seq19254 93.3 4e-14 >seq10668 Length=117041 Score = 118 bits (130), Expect = 9e-22 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||| ||||| ||||| ||||| | | | || || || | | ||||| Sbjct 94127 ACGCCAGTGCTTCCGAAGCCGCCAGCGCCGCGGACGCTCTCCTCGAGCTCCTCTACCTCG 94068 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| ||||| | | || ||||||| ||||||||| || | || || ||| Sbjct 94067 ACCACTTCGGG-AGTGTAGATGCGCTCGATGATCAGCTGGGCGACGCGATCACCCTCAGC 94009 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 ||| | || ||| ||| | || ||||||||||| | || | |||||||||||| Sbjct 94008 CACCGCAAAGTCGGTGTCGGCGTGGTTGAACAGCAGGATCTTGACCTGGCCGCGGTAGTC 93949 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||| || || ||||| |||||| |||||||||||||||| || ||||| |||||||| Sbjct 93948 GGCATCAATGACGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGG 93889 Query 5740 AGCCACGCGGCCGT 5753 || | |||||||| Sbjct 93888 GGCGATGCGGCCGT 93875 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCC 5640 |||||| ||||||||| || | ||||| ||| ||| | || ||| ||| | | Sbjct 90412 GCGCTCAATGATCAGCTGGGCGACGCGGTCACCCTCGGCCACCGCAAAGTCGGTGTCGGC 90353 Query 5641 GAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 | ||||||||| | | || | ||||||||||||||| || || ||||| ||||| Sbjct 90352 GTGGTTGAACAGAAGGATCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCAGCGCC 90293 Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 | |||||||||||||||| || ||||| |||||||| || | |||||||| Sbjct 90292 CGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGGGGCGATGCGGCCGT 90240 >seq19254 Length=102 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 5668 GCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAG 5727 ||||||||||||||| || || ||||| |||||| |||||||||||||||| || || Sbjct 88 GCCGCGGTAGTCGGCATCAATGACGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAG 29 Query 5728 GCCGGAGCGGGGAGCCACGCGGCCGT 5753 ||| |||||||| || | |||||||| Sbjct 28 GCCAGAGCGGGGGGCGATGCGGCCGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429907219391672