Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 100 2e-16
seq11113 86.0 5e-12
>seq23972
Length=267833
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| |||||| ||||||||||| || | ||| || | ||||| ||||||
Sbjct 225269 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGC 225210
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || || | || | |||||| || || || | || ||||||||| ||| |||
Sbjct 225209 TTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTC 225150
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | ||||| |||| ||||||| ||| | || ||||| || |||||
Sbjct 225149 GACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTC 225090
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || || ||||| ||||||||
Sbjct 225089 AGCGTCTTGACAAAGATCTGCAT 225067
>seq11113
Length=490148
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| || |||||| ||||||||||| || | || || | ||||| ||||||
Sbjct 77471 TGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGC 77530
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || | | || | ||||| || || || | || ||||||||| ||| ||
Sbjct 77531 TTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTG 77590
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||||| | | || ||||| |||| |||||| ||||| || ||||| || ||||
Sbjct 77591 GACTTGACGTTGTCG--ATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGG 77648
Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| || ||||| ||||||||
Sbjct 77649 TCAGAGTCTTGACAAAGATCTGCAT 77673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421107032174081
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |