Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq24972 98.7 9e-16 seq3669 95.1 1e-14 >seq24972 Length=243428 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/234 (72%), Gaps = 11/234 (5%) Strand=Plus/Minus Query 94192 GCGC-CGCACGGTCAGCGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCA-GGCCTC- 94248 |||| ||||| ||||| |||||| ||||||||||| |||||| |||||| ||| || Sbjct 5670 GCGCGCGCACCGTCAGGCACGTGTTGAGCAGCAGCACGCCGCGGTCCGCCCACGGCGTCA 5611 Query 94249 -CAGGCA-GCCGTG---GGCGGGCGCGGGCAGCGTCGGGTACGTCGCCCGG-ACCGCCGC 94302 ||||| ||| || ||||| ||| | || |||||||| ||||| | | || Sbjct 5610 GCAGGCCCGCCTTGTTGGGCGGCGGCGTGAAG-GTCGGGTA-GTCGCGCTTCAGGGCTAT 5553 Query 94303 GAAGATGTTGGCCAGGCTCGGGGGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCC 94362 | | ||||| ||| |||||| |||| | | ||||||| |||||| || || Sbjct 5552 GTACATGTTCTTGAGGGACGGGGGCGCCGGCGTCGGGGCCCGGACGGAGAAGGCGAGGCC 5493 Query 94363 GTGGGCCTGGCCCGGCCCGTGGTACGGGTCCTGGCCGATGATGACCACCTTGAC 94416 |||||||||| |||||| ||||||||||||| |||||| |||||||| Sbjct 5492 GTGGGCCTGGTTGATGTTGTGGTAGGGGTCCTGGCCGAGGATGACGACCTTGAC 5439 >seq3669 Length=173888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/234 (71%), Gaps = 11/234 (5%) Strand=Plus/Plus Query 94192 GCGC-CGCACGGTCAGCGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCA-GGCCTC- 94248 |||| ||||| ||||| |||||| ||||||||||| |||||| |||||| ||| || Sbjct 55106 GCGCGCGCACCGTCAGGCACGTGTTGAGCAGCAGCACGCCGCGGTCCGCCCACGGCGTCA 55165 Query 94249 -CAGGCA-GCCGTG---GGCGGGCGCGGGCAGCGTCGGGTACGTCGCCCGG-ACCGCCGC 94302 ||||| ||| || ||||| ||| | || |||||||| ||||| | | || Sbjct 55166 GCAGGCCCGCCTTGTTGGGCGGCGGCGTGAAG-GTCGGGTA-GTCGCGCTTCAGGGCAAT 55223 Query 94303 GAAGATGTTGGCCAGGCTCGGGGGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCC 94362 | | ||||| ||| |||||| |||| | | |||||| |||||| || || Sbjct 55224 GTACATGTTCTTGAGGGACGGGGGCGCCGGCGTCGGGGCGCGGACGGAGAAGGCGAGGCC 55283 Query 94363 GTGGGCCTGGCCCGGCCCGTGGTACGGGTCCTGGCCGATGATGACCACCTTGAC 94416 |||||||||| |||||| ||||||||||||| |||||| |||||||| Sbjct 55284 GTGGGCCTGGTTGACGTTGTGGTAGGGGTCCTGGCCGAGGATGACGACCTTGAC 55337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458786103795960