Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq3335 114 2e-21
seq20640 105 1e-18
seq3447 105 1e-18
>seq3335
Length=602095
Score = 114 bits (126), Expect = 2e-21
Identities = 88/102 (86%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 13692 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 13634
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 13633 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 13592
Score = 114 bits (126), Expect = 2e-21
Identities = 88/102 (86%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 31741 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 31683
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 31682 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 31641
Score = 82.4 bits (90), Expect = 1e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| || | |||| ||||| ||||||| || || || | ||| |
Sbjct 13534 TGATCTACGAGGAGACCCGCGGTGTTCTGAAGTCCTTCCTCGAGGGTGTCATTCGTGACG 13475
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || || || ||||| || || || ||||||||||| ||| | || | ||||| |
Sbjct 13474 CCGTCACGTACACGGAGCATGCCAAGCGCAAGACTGTCACGTCCCTTGACGTGGTCTACG 13415
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
| ||||| || || ||||||| |||| ||||| || ||||
Sbjct 13414 CTTTGAAGCGCCAGGGCCGTACTCTTTACGGTTTCGGTGGTTA 13372
>seq20640
Length=410660
Score = 105 bits (116), Expect = 1e-18
Identities = 86/102 (84%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 265128 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 265186
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| || |||||||| || ||||||||| | ||||
Sbjct 265187 TCCGTCGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 265228
>seq3447
Length=175797
Score = 105 bits (116), Expect = 1e-18
Identities = 86/102 (84%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 112888 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGCATCACCAAGCCCGCTA 112830
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| || |||||||| || ||||||||| | ||||
Sbjct 112829 TCCGTCGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 112788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79049525345133
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |