Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3335 114 2e-21 seq20640 105 1e-18 seq3447 105 1e-18 >seq3335 Length=602095 Score = 114 bits (126), Expect = 2e-21 Identities = 88/102 (86%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 13692 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 13634 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| |||||||||||||| ||||||||| | |||| Sbjct 13633 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 13592 Score = 114 bits (126), Expect = 2e-21 Identities = 88/102 (86%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 31741 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 31683 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| |||||||||||||| ||||||||| | |||| Sbjct 31682 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 31641 Score = 82.4 bits (90), Expect = 1e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| ||||| ||||||| || || || | ||| | Sbjct 13534 TGATCTACGAGGAGACCCGCGGTGTTCTGAAGTCCTTCCTCGAGGGTGTCATTCGTGACG 13475 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || || ||||| || || || ||||||||||| ||| | || | ||||| | Sbjct 13474 CCGTCACGTACACGGAGCATGCCAAGCGCAAGACTGTCACGTCCCTTGACGTGGTCTACG 13415 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | ||||| || || ||||||| |||| ||||| || |||| Sbjct 13414 CTTTGAAGCGCCAGGGCCGTACTCTTTACGGTTTCGGTGGTTA 13372 >seq20640 Length=410660 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 265128 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 265186 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| || |||||||| || ||||||||| | |||| Sbjct 265187 TCCGTCGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 265228 >seq3447 Length=175797 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 112888 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGCATCACCAAGCCCGCTA 112830 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| || |||||||| || ||||||||| | |||| Sbjct 112829 TCCGTCGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 112788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79049525345133