Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq24749 147 3e-30 seq28027 91.5 2e-13 seq18890 91.5 2e-13 >seq24749 Length=740841 Score = 147 bits (162), Expect = 3e-30 Identities = 453/698 (65%), Gaps = 12/698 (2%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | | ||| || |||| | || || || ||||| Sbjct 416253 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 416194 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 |||||||| || ||||| || || | || ||||| | | | | |||||| || || Sbjct 416193 AAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCG 416134 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||| Sbjct 416133 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 416074 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 416073 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 416014 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| || | || |||||||| | || ||||| |||| || || ||| Sbjct 416013 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 415954 Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 ||||||| || | | ||||| || || || ||||| || ||||| | || Sbjct 415953 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 415894 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 || || | ||||| |||||||| || ||||| ||||| |||||| || || || Sbjct 415893 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 415834 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 ||| |||| || || || || || || || | ||||||||| ||||| || Sbjct 415833 CAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTG 415774 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCCAT 63701 || |||| || | || |||||||||||||| ||| | || | | |||| Sbjct 415773 AAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC-- 415717 Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761 || || || | |||||||| | ||||||||| || | || | |||||| | Sbjct 415716 ---CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCG 415660 Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63821 | | || | | ||||| |||| || || || ||||| || | ||| ||| Sbjct 415659 TCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAG 415600 Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 || || ||||| | ||| |||||| || | ||||| Sbjct 415599 TCACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 415562 >seq28027 Length=10271 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| ||||| ||| ||| ||||||||||| | | || || |||||||| Sbjct 5101 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 5160 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| ||||| ||||| || ||||| || ||||| ||||| | || Sbjct 5161 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 5220 Query 33415 GAAAAGAAGATTCCTTCTAC 33434 |||||||| || || || Sbjct 5221 CTGAAGAAGATACCCTCAAC 5240 >seq18890 Length=446397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| ||||| ||| ||| ||||||||||| | | || || |||||||| Sbjct 160332 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 160391 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| ||||| ||||| || ||||| || ||||| ||||| | || Sbjct 160392 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 160451 Query 33415 GAAAAGAAGATTCCTTCTAC 33434 |||||||| || || || Sbjct 160452 CTGAAGAAGATACCCTCAAC 160471 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| ||||| ||| ||| ||||||||||| | | || || |||||||| Sbjct 409298 AACAGCAGACAAGCGAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 409239 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| ||||| ||||| || ||||| || ||||| ||||| | || Sbjct 409238 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 409179 Query 33415 GAAAAGAAGATTCCTTCTAC 33434 |||||||| || || || Sbjct 409178 CTGAAGAAGATACCCTCAAC 409159 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/259 (67%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || || ||||| || |||||||| |||| |||||| | || | Sbjct 408932 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 408873 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | || || || || | | || || || || || || || || ||| Sbjct 408872 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 408813 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 33775 || || || | | ||| || || || ||||| || || | || || |||| Sbjct 408812 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 408755 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || | || ||| ||||||| ||| | ||||| | ||||| || || |||||||||| Sbjct 408754 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 408695 Query 33836 TTTTATACATGTTCCAGAT 33854 | || ||||| | ||| || Sbjct 408694 TCTTGTACATTTGCCAAAT 408676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622728537745960