Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 343 4e-89
seq27938 217 4e-51
>seq24749
Length=740841
Score = 343 bits (380), Expect = 4e-89
Identities = 1078/1643 (66%), Gaps = 60/1643 (4%)
Strand=Plus/Plus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| ||||| | || || | | ||| ||||| || | | | | ||| |||| ||
Sbjct 415772 TTCACACACGCATCTCCTACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCC 415831
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || ||| || ||||||| ||||| || ||||
Sbjct 415832 TGCTTCCTGGTTGACATGAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACC 415891
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
||||| | || ||||||| || || || |||||| | | || |||| | |||||
Sbjct 415892 TGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAACG-TCCATCGCATCCGTGC 415950
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | | ||||||| |||||| || || || || | ||||||||||
Sbjct 415951 CACTGG-CTCTTACATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTC 416009
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
| || || |||| || ||| | ||||| |||||||| || ||||| || || |
Sbjct 416010 GCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTT 416069
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
|||| || || || ||||| || || ||| | || ||||| ||||| ||||| || |
Sbjct 416070 TTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGA 416129
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|| || || |||||| | || || || ||||| ||| || || ||| | | || |
Sbjct 416130 ACCACGGCAAGGAGGAAGTTCGCGCTCGCGATCTTTTCCTGGCCCTGTGGATCCCCGATC 416189
Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATG 364022
|| |||||||| || ||| | | | | | ||| | ||| | ||||| |||| ||
Sbjct 416190 TCTTCATGAAGCGTGTCGAG--AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTG 416247
Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082
|| || ||| | || | |||||||| | || || | ||||| ||||| ||
Sbjct 416248 CCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAA 416307
Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142
|| || |||| || ||||| || || |||||||| |||| ||| || | || |
Sbjct 416308 GGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGC 416367
Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202
|||| ||||| || | |||| ||| | ||||| ||| |||||||||||| |||
Sbjct 416368 TCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAA 416427
Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACA 364261
|||| || |||||||||| |||| |||| |||||| || || |||||| | || |||
Sbjct 416428 CCAGAAGAACCTTGGTACCATTC-GCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACT 416486
Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT---TTG 364318
| || ||||| ||| |||||| || ||||| || || | || || || || | |||
Sbjct 416487 CGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTG 416546
Query 364319 --TA-AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG-CTACT 364374
|| || | || | |||| | || | || | | || || ||| | | |
Sbjct 416547 ATTACAACAACGGCGTGTATGACTTCAAGAAGCTCCACCAGGTCAC---TCAGGTCGTCG 416603
Query 364375 T--GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----A 364427
| | || ||| ||| | | |||||| ||| |||| || | || || || |
Sbjct 416604 TCAGGAACCTCAACAGGATCATCGACGTGAACCATTACCCCGTCATCGAGGCTCGCAACA 416663
Query 364428 GCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT 364487
|| || ||||| ||||| || ||||| |||||||| |||||| | ||||| | |||
Sbjct 416664 GC-----AACATGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTT 416718
Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547
| ||| ||| | ||||| |||||||| || | || || ||| |||||||
Sbjct 416719 CCTTGCTCTCCGCATGCCCTTTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTT 416778
Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAAC---CAAGGG 364604
||| || || || || || |||| | ||| || |||| | || | |
Sbjct 416779 TGAGACCATCTACCACGCTGCCCTGAC-----CATGTCAT---GCAAGCTCGCTCAGGAG 416830
Query 364605 AAAG-----TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGAT 364659
||| ||||| || |||||||| || || | || ||||| | | || | ||
Sbjct 416831 GAAGGCCCCTACTCCACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGAC 416890
Query 364660 CTATGGAATGTCACGCCATCTGTCCGATGGAACTGGG-ATACGCTACGTTCCAACGTTAA 364718
| ||||| |||| ||| ||| || ||| |||||| || | | || | | ||
Sbjct 416891 ATGTGGAACGTCAAGCCTACTGACCTTTGGGACTGGGCCGACCTCAAGAGCC-AGATCAA 416949
Query 364719 GAAGCATGGTACTCGCAAC--TC-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGC 364775
| | ||||| || ||| || ||||| ||||||||||||||||| ||| |
Sbjct 416950 GCAACATGGCGTCCGTAACAGTCTTCTCGT---GGCGCCCATGCCCACGGCCAGTACCTC 417006
Query 364776 ACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGC 364833
|||||||| || ||||||||||||||||| || ||||| | ||| | || |||
Sbjct 417007 GCAGATCCTTGGCAACAACGAGTGCTTCGAGCC--TTACACGTCCAACATCTACCAGCGC 417064
Query 364834 CGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGAC 364893
|| || || |||| || || | ||| || || | || ||||||||||| |||
Sbjct 417065 CGTGTGCTCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGAC 417124
Query 364894 CGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAG 364953
|| || ||| ||| ||||||||||| ||||| |||| |||||||| | |||
Sbjct 417125 ATGGGTCTTTGGTCTGATAGCATGAAGAATCGCATCATTGCCGAGAATGGTTCCATCCAG 417184
Query 364954 AACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC 365013
||||| || |||| | || | ||| | | ||||| || || ||||| |||||
Sbjct 417185 AACATCCCCAACATTCCCGCCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCT 417244
Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073
||| || | | | ||||| |||||||| ||||| || ||| ||| ||||||
Sbjct 417245 CAGCGCACCGTTGTGCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCC 417304
Query 365074 TTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133
|| ||| | ||||| | || ||| | |||| | || |||||| ||| |||
Sbjct 417305 TTGAACATTCACATGAAGGACCCTACCATGGGCAAGATCACGAGCATGCACTTCGCCGGC 417364
Query 365134 TGGAAATCCGGTCTTAAGACAGG 365156
||||| || || ||||| ||
Sbjct 417365 TGGAAGCTTGGCCTCAAGACCGG 417387
Score = 176 bits (194), Expect = 1e-38
Identities = 486/736 (66%), Gaps = 28/736 (4%)
Strand=Plus/Minus
Query 364435 AATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATG 364494
|| ||||| ||||| || ||||| |||||||| |||||| | ||||| | ||| |
Sbjct 447338 AACATGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCT 447279
Query 364495 CTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACA 364554
||| ||| | ||||| |||||||| || | || || ||| |||||||||| ||
Sbjct 447278 CTCCGCATGCCCTTTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACC 447219
Query 364555 ATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAAC---CAAGGGAAAG--- 364608
|| || || || |||| | ||| || |||| | || | | |||
Sbjct 447218 ATCTACCACGCTGCCCTGAC-----CATGTCAT---GCAAGCTCGCTCAGGAGGAAGGCC 447167
Query 364609 --TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGA 364666
||||| || |||||||| || || | || ||||| | | || | || | ||||
Sbjct 447166 CCTACTCCACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGTGGA 447107
Query 364667 ATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCAT 364725
| |||| ||| ||| || ||| |||||| || | | ||| | ||| | |||
Sbjct 447106 ACGTCAAGCCTACTGACCTTTGGGACTGGGCCGACCTCAAGAGCCAGA-TCAAGCAACAT 447048
Query 364726 GGTACTCGCAAC--TCC-CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782
|| || ||| || ||||| ||||||||||||||||| ||| | ||||||
Sbjct 447047 GGCGTCCGTAACAGTCTTCTCGTG---GCGCCCATGCCCACGGCCAGTACCTCGCAGATC 446991
Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTC 364840
|| || ||||||||||||||||| || ||||| | ||| | || ||||| || |
Sbjct 446990 CTTGGCAACAACGAGTGCTTCGAGCC--TTACACGTCCAACATCTACCAGCGCCGTGTGC 446933
Query 364841 TTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGC 364900
| |||| || || | ||| || || | || ||||||| ||| |||| || |
Sbjct 446932 TCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTC 446873
Query 364901 TGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC 364960
| ||| ||| |||||||||||| ||||| || | |||||||| | ||||||||||
Sbjct 446872 TTTGGTCTGATAGCATGAAGAACCGCATCATTGCAGAAAATGGTTCCATCCAGAACATTC 446813
Query 364961 CAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA 365020
| |||| | || | ||| | | ||||| || || ||||| ||||| ||| |
Sbjct 446812 CCAACATTCCCGCCGACATCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGCA 446753
Query 365021 CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACG 365080
| || || | ||||| |||||||| ||||| || ||| ||| ||||| || |||
Sbjct 446752 CCGTCGTTCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCTCAGTCCTTGAACA 446693
Query 365081 TATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAAT 365140
| ||||| | || ||| | |||| | || |||||| ||| ||| |||||
Sbjct 446692 TTCACATGAAGGACCCTACCATGGGCAAGATCACGAGCATGCACTTCGCCGGCTGGAAGC 446633
Query 365141 CCGGTCTTAAGACAGG 365156
|| || ||||| ||
Sbjct 446632 TTGGCCTCAAGACCGG 446617
>seq27938
Length=10276
Score = 217 bits (240), Expect = 4e-51
Identities = 455/668 (68%), Gaps = 10/668 (1%)
Strand=Plus/Minus
Query 363636 CATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGG 363695
||| || ||||||| ||||| || |||| ||||| | || ||||||| || || ||
Sbjct 10274 CATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGG 10215
Query 363696 AATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGG 363753
|||||| | | || |||| | ||||| || | | ||||||| ||||||
Sbjct 10214 TATTGGTCTGAACG-TCCATCGCATCCGTGCCACTGG-CTCTTACATTGCCGGCACCAAC 10157
Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813
|| || || || | ||||||||||| || || |||| || ||| | |||||
Sbjct 10156 GGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTT 10097
Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873
|||||||| || ||||| || || ||||| || || || ||||| || ||
Sbjct 10096 GACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCT 10037
Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933
||| | || ||||| ||||| ||||| || ||| || || |||||| | || || ||
Sbjct 10036 GATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGC 9977
Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG 363993
||||| ||| || || ||| | | || | || |||||||| || ||| | | | |
Sbjct 9976 GATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG--AAGAACG 9919
Query 363994 A--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACG 364051
| ||| | ||| | ||||| |||| || || || ||| | || | |||||||
Sbjct 9918 GCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACG 9859
Query 364052 ACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCG 364111
| | || || | ||||| ||||| || || || |||| || ||||| || |
Sbjct 9858 AGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACCATCAAGG 9799
Query 364112 CACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGT 364171
| |||||||| |||| ||| || | || | |||| ||||| || | |||| |||
Sbjct 9798 CGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGC 9739
Query 364172 TGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG- 364230
| ||||| ||| |||||||||||| ||||||| || |||||||||| |||| ||||
Sbjct 9738 TCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTC-GCAGC 9680
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290
|||||| || || |||||| | || ||| | || ||||| ||| |||||| || |||
Sbjct 9679 TCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAAC 9620
Query 364291 CTTGCGTC 364298
|| || ||
Sbjct 9619 CTGGCCTC 9612
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302884669259342
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