Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq24749 343 4e-89 seq27938 217 4e-51 >seq24749 Length=740841 Score = 343 bits (380), Expect = 4e-89 Identities = 1078/1643 (66%), Gaps = 60/1643 (4%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | || || | | ||| ||||| || | | | | ||| |||| || Sbjct 415772 TTCACACACGCATCTCCTACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCC 415831 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || ||| || ||||||| ||||| || |||| Sbjct 415832 TGCTTCCTGGTTGACATGAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACC 415891 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || || |||||| | | || |||| | ||||| Sbjct 415892 TGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAACG-TCCATCGCATCCGTGC 415950 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||||| |||||| || || || || | |||||||||| Sbjct 415951 CACTGG-CTCTTACATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTC 416009 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | || || |||| || ||| | ||||| |||||||| || ||||| || || | Sbjct 416010 GCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTT 416069 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || || || ||||| || || ||| | || ||||| ||||| ||||| || | Sbjct 416070 TTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGA 416129 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || |||||| | || || || ||||| ||| || || ||| | | || | Sbjct 416130 ACCACGGCAAGGAGGAAGTTCGCGCTCGCGATCTTTTCCTGGCCCTGTGGATCCCCGATC 416189 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||||| || ||| | | | | | ||| | ||| | ||||| |||| || Sbjct 416190 TCTTCATGAAGCGTGTCGAG--AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTG 416247 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || ||| | || | |||||||| | || || | ||||| ||||| || Sbjct 416248 CCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAA 416307 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 || || |||| || ||||| || || |||||||| |||| ||| || | || | Sbjct 416308 GGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGC 416367 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| ||||| || | |||| ||| | ||||| ||| |||||||||||| ||| Sbjct 416368 TCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAA 416427 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || |||||||||| |||| |||| |||||| || || |||||| | || ||| Sbjct 416428 CCAGAAGAACCTTGGTACCATTC-GCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACT 416486 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT---TTG 364318 | || ||||| ||| |||||| || ||||| || || | || || || || | ||| Sbjct 416487 CGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTG 416546 Query 364319 --TA-AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG-CTACT 364374 || || | || | |||| | || | || | | || || ||| | | | Sbjct 416547 ATTACAACAACGGCGTGTATGACTTCAAGAAGCTCCACCAGGTCAC---TCAGGTCGTCG 416603 Query 364375 T--GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----A 364427 | | || ||| ||| | | |||||| ||| |||| || | || || || | Sbjct 416604 TCAGGAACCTCAACAGGATCATCGACGTGAACCATTACCCCGTCATCGAGGCTCGCAACA 416663 Query 364428 GCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT 364487 || || ||||| ||||| || ||||| |||||||| |||||| | ||||| | ||| Sbjct 416664 GC-----AACATGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTT 416718 Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 | ||| ||| | ||||| |||||||| || | || || ||| ||||||| Sbjct 416719 CCTTGCTCTCCGCATGCCCTTTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTT 416778 Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAAC---CAAGGG 364604 ||| || || || || || |||| | ||| || |||| | || | | Sbjct 416779 TGAGACCATCTACCACGCTGCCCTGAC-----CATGTCAT---GCAAGCTCGCTCAGGAG 416830 Query 364605 AAAG-----TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGAT 364659 ||| ||||| || |||||||| || || | || ||||| | | || | || Sbjct 416831 GAAGGCCCCTACTCCACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGAC 416890 Query 364660 CTATGGAATGTCACGCCATCTGTCCGATGGAACTGGG-ATACGCTACGTTCCAACGTTAA 364718 | ||||| |||| ||| ||| || ||| |||||| || | | || | | || Sbjct 416891 ATGTGGAACGTCAAGCCTACTGACCTTTGGGACTGGGCCGACCTCAAGAGCC-AGATCAA 416949 Query 364719 GAAGCATGGTACTCGCAAC--TC-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGC 364775 | | ||||| || ||| || ||||| ||||||||||||||||| ||| | Sbjct 416950 GCAACATGGCGTCCGTAACAGTCTTCTCGT---GGCGCCCATGCCCACGGCCAGTACCTC 417006 Query 364776 ACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGC 364833 |||||||| || ||||||||||||||||| || ||||| | ||| | || ||| Sbjct 417007 GCAGATCCTTGGCAACAACGAGTGCTTCGAGCC--TTACACGTCCAACATCTACCAGCGC 417064 Query 364834 CGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGAC 364893 || || || |||| || || | ||| || || | || ||||||||||| ||| Sbjct 417065 CGTGTGCTCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGAC 417124 Query 364894 CGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAG 364953 || || ||| ||| ||||||||||| ||||| |||| |||||||| | ||| Sbjct 417125 ATGGGTCTTTGGTCTGATAGCATGAAGAATCGCATCATTGCCGAGAATGGTTCCATCCAG 417184 Query 364954 AACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC 365013 ||||| || |||| | || | ||| | | ||||| || || ||||| ||||| Sbjct 417185 AACATCCCCAACATTCCCGCCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCT 417244 Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073 ||| || | | | ||||| |||||||| ||||| || ||| ||| |||||| Sbjct 417245 CAGCGCACCGTTGTGCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCC 417304 Query 365074 TTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133 || ||| | ||||| | || ||| | |||| | || |||||| ||| ||| Sbjct 417305 TTGAACATTCACATGAAGGACCCTACCATGGGCAAGATCACGAGCATGCACTTCGCCGGC 417364 Query 365134 TGGAAATCCGGTCTTAAGACAGG 365156 ||||| || || ||||| || Sbjct 417365 TGGAAGCTTGGCCTCAAGACCGG 417387 Score = 176 bits (194), Expect = 1e-38 Identities = 486/736 (66%), Gaps = 28/736 (4%) Strand=Plus/Minus Query 364435 AATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATG 364494 || ||||| ||||| || ||||| |||||||| |||||| | ||||| | ||| | Sbjct 447338 AACATGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCT 447279 Query 364495 CTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACA 364554 ||| ||| | ||||| |||||||| || | || || ||| |||||||||| || Sbjct 447278 CTCCGCATGCCCTTTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACC 447219 Query 364555 ATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAAC---CAAGGGAAAG--- 364608 || || || || |||| | ||| || |||| | || | | ||| Sbjct 447218 ATCTACCACGCTGCCCTGAC-----CATGTCAT---GCAAGCTCGCTCAGGAGGAAGGCC 447167 Query 364609 --TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGA 364666 ||||| || |||||||| || || | || ||||| | | || | || | |||| Sbjct 447166 CCTACTCCACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGTGGA 447107 Query 364667 ATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCAT 364725 | |||| ||| ||| || ||| |||||| || | | ||| | ||| | ||| Sbjct 447106 ACGTCAAGCCTACTGACCTTTGGGACTGGGCCGACCTCAAGAGCCAGA-TCAAGCAACAT 447048 Query 364726 GGTACTCGCAAC--TCC-CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || || ||| || ||||| ||||||||||||||||| ||| | |||||| Sbjct 447047 GGCGTCCGTAACAGTCTTCTCGTG---GCGCCCATGCCCACGGCCAGTACCTCGCAGATC 446991 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTC 364840 || || ||||||||||||||||| || ||||| | ||| | || ||||| || | Sbjct 446990 CTTGGCAACAACGAGTGCTTCGAGCC--TTACACGTCCAACATCTACCAGCGCCGTGTGC 446933 Query 364841 TTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGC 364900 | |||| || || | ||| || || | || ||||||| ||| |||| || | Sbjct 446932 TCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTC 446873 Query 364901 TGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC 364960 | ||| ||| |||||||||||| ||||| || | |||||||| | |||||||||| Sbjct 446872 TTTGGTCTGATAGCATGAAGAACCGCATCATTGCAGAAAATGGTTCCATCCAGAACATTC 446813 Query 364961 CAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA 365020 | |||| | || | ||| | | ||||| || || ||||| ||||| ||| | Sbjct 446812 CCAACATTCCCGCCGACATCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGCA 446753 Query 365021 CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACG 365080 | || || | ||||| |||||||| ||||| || ||| ||| ||||| || ||| Sbjct 446752 CCGTCGTTCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCTCAGTCCTTGAACA 446693 Query 365081 TATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAAT 365140 | ||||| | || ||| | |||| | || |||||| ||| ||| ||||| Sbjct 446692 TTCACATGAAGGACCCTACCATGGGCAAGATCACGAGCATGCACTTCGCCGGCTGGAAGC 446633 Query 365141 CCGGTCTTAAGACAGG 365156 || || ||||| || Sbjct 446632 TTGGCCTCAAGACCGG 446617 >seq27938 Length=10276 Score = 217 bits (240), Expect = 4e-51 Identities = 455/668 (68%), Gaps = 10/668 (1%) Strand=Plus/Minus Query 363636 CATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGG 363695 ||| || ||||||| ||||| || |||| ||||| | || ||||||| || || || Sbjct 10274 CATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGG 10215 Query 363696 AATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGG 363753 |||||| | | || |||| | ||||| || | | ||||||| |||||| Sbjct 10214 TATTGGTCTGAACG-TCCATCGCATCCGTGCCACTGG-CTCTTACATTGCCGGCACCAAC 10157 Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 || || || || | ||||||||||| || || |||| || ||| | ||||| Sbjct 10156 GGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTT 10097 Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873 |||||||| || ||||| || || ||||| || || || ||||| || || Sbjct 10096 GACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCT 10037 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933 ||| | || ||||| ||||| ||||| || ||| || || |||||| | || || || Sbjct 10036 GATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGC 9977 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG 363993 ||||| ||| || || ||| | | || | || |||||||| || ||| | | | | Sbjct 9976 GATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG--AAGAACG 9919 Query 363994 A--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACG 364051 | ||| | ||| | ||||| |||| || || || ||| | || | ||||||| Sbjct 9918 GCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACG 9859 Query 364052 ACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCG 364111 | | || || | ||||| ||||| || || || |||| || ||||| || | Sbjct 9858 AGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACCATCAAGG 9799 Query 364112 CACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGT 364171 | |||||||| |||| ||| || | || | |||| ||||| || | |||| ||| Sbjct 9798 CGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGC 9739 Query 364172 TGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG- 364230 | ||||| ||| |||||||||||| ||||||| || |||||||||| |||| |||| Sbjct 9738 TCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTC-GCAGC 9680 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290 |||||| || || |||||| | || ||| | || ||||| ||| |||||| || ||| Sbjct 9679 TCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAAC 9620 Query 364291 CTTGCGTC 364298 || || || Sbjct 9619 CTGGCCTC 9612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302884669259342