Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq23972 104 2e-17 seq22587 91.5 1e-13 seq11113 87.8 1e-12 seq26527 82.4 6e-11 >seq23972 Length=267833 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| || |||||||| || ||||||||||| | || ||| | ||||| Sbjct 225506 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 225447 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || |||| || |||||||| || ||| | |||||| ||||| Sbjct 225446 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCT 225387 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | |||||| | | | | |||||| | || ||||| ||||| || Sbjct 225386 TGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 225327 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| ||||| ||||| || || ||||| Sbjct 225326 TTACCGGTGAGCGTCTTGACGAAGATTTGCAT 225295 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||| || || | ||||| | || Sbjct 225269 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGC 225210 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || || ||||||||||| ||| | ||||| ||||| ||| | | Sbjct 225209 TTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTC 225150 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | |||| || | |||||||| || |||||| Sbjct 225149 GACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTC 225090 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| |||||||| Sbjct 225089 AGCGTCTTGACAAAGATCTGCAT 225067 >seq22587 Length=423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | | ||||| | || Sbjct 288 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGC 229 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| |||| || ||||||||||| || | |||||| ||||| || | Sbjct 228 TTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 169 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | |||| || | |||||| || || || || Sbjct 168 GACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 109 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 108 AGGGTCTTGACGAAGATCTGCAT 86 >seq11113 Length=490148 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| || || | ||||| | || Sbjct 77471 TGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGC 77530 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || || ||||||||||| ||| | ||||| ||||| ||| | Sbjct 77531 TTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTG 77590 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| || | |||||||| || |||||| Sbjct 77591 GACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTC 77650 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| |||||||| Sbjct 77651 AGAGTCTTGACAAAGATCTGCAT 77673 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| || |||||||| || ||||||||||| | || ||| | ||| Sbjct 77234 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCC 77293 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || |||| || ||||||||||| ||| | ||||| ||||| Sbjct 77294 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCT 77353 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||| || | | | | |||||| | || ||||| ||||| || Sbjct 77354 TGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 77413 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| || || ||||| Sbjct 77414 TTACCGGTGAGTGTCTTGACGAAGATTTGCAT 77445 >seq26527 Length=223112 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| | || | | ||||| | || Sbjct 222601 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGC 222660 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || ||||||||||| || | |||||| ||||| || | Sbjct 222661 TTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 222720 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | |||| || | |||||| || || || || Sbjct 222721 GACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 222780 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 222781 AGGGTCTTGACGAAGATCTGCAT 222803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404949363822190