Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq16224 136 3e-27
seq27250 120 2e-22
seq3447 91.5 1e-13
seq1447 91.5 1e-13
>seq16224
Length=81348
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 80910 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 80969
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 80970 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 81004
>seq27250
Length=10371
Score = 120 bits (132), Expect = 2e-22
Identities = 215/314 (68%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233
||||| ||| |||| || ||| ||||||||||||||| ||| ||| || ||
Sbjct 5014 AACGTTCGTCGCGATGTCGCCGACCAGTTCTACCGCTACAAGATGGAGCGTCTCCAGACC 5073
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
||| | ||||| ||||| || || || || ||||||||||||||| || | |||||
Sbjct 5074 AAGATTGAGGGCAAGGGCAATGGCATCAAGACCGTCATTGTCAACCTGACCAGTGTCGCC 5133
Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353
|| | || | ||||| | | |||||| | || || ||||| | ||| || || ||
Sbjct 5134 CAGTCTCTGGCCCGCCCCGGCGCCTACCTCATCAAGTACTTCGGTTTCGAGCTCGGTGCC 5193
Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413
||||| | |||| | | |||| || | ||| | ||||| | || | ||
Sbjct 5194 CAGACCAACATTGACCCCGCTGACGATCGTTGGATCATCAACGGTGCCCACGATGGCCCC 5253
Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473
||||| ||||| ||||||||||| || ||||||| ||||| || | | ||| |
Sbjct 5254 AAGCTTCAGGATCACCTTGACGGCTTCATCAGCAAGTTCGTGCTTTGCAAGAAGTGCAAG 5313
Query 6474 AACCCGGAGACCGA 6487
||||| ||||| ||
Sbjct 5314 AACCCTGAGACGGA 5327
>seq3447
Length=175797
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233
||||| ||| |||| || ||| ||||||||||||||| ||| ||| || ||
Sbjct 60743 AACGTTCGTCGCGATGTCGCCGACCAGTTCTACCGCTACAAGATGGAGCGTCTCCAGACC 60802
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
||| | ||||| ||||| || || || || ||||||||||||||| || | |||||
Sbjct 60803 AAGATTGAGGGCAAGGGCAATGGCATCAAGACCGTCATTGTCAACCTGACCAGTGTCGCC 60862
Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353
|| | || | ||||| | | |||||| | || || ||||| | ||| || || ||
Sbjct 60863 CAGTCTCTGGCCCGCCCCGGCGCCTACCTCATCAAGTACTTCGGTTTCGAGCTCGGTGCC 60922
Query 6354 CAGAC 6358
|||||
Sbjct 60923 CAGAC 60927
>seq1447
Length=194970
Score = 91.5 bits (100), Expect = 1e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233
||||| ||| |||| || ||| ||||||||||||||| ||| |||| || ||
Sbjct 144790 AACGTTCGTCGCGATGTCGCCGACCAGTTCTACCGCTACAAGATGGAGCGCCTCCAGACC 144849
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
||| | ||||| ||||| || || || || ||||||||||||||| || | |||||
Sbjct 144850 AAGATTGAGGGCAAGGGCAATGGCATCAAGACCGTCATTGTCAACCTGACCAGTGTCGCC 144909
Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353
|| | || | ||||| | | |||||| | || || ||||| | ||| || || ||
Sbjct 144910 CAGTCTCTGGCCCGCCCCGGCGCCTACCTCATCAAGTACTTCGGTTTCGAGCTCGGTGCC 144969
Query 6354 CAG 6356
|||
Sbjct 144970 CAG 144972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334832568612311
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |