Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq16224 136 3e-27 seq27250 120 2e-22 seq3447 91.5 1e-13 seq1447 91.5 1e-13 >seq16224 Length=81348 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 80910 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 80969 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 80970 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 81004 >seq27250 Length=10371 Score = 120 bits (132), Expect = 2e-22 Identities = 215/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| ||| |||| || ||| ||||||||||||||| ||| ||| || || Sbjct 5014 AACGTTCGTCGCGATGTCGCCGACCAGTTCTACCGCTACAAGATGGAGCGTCTCCAGACC 5073 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| | ||||| ||||| || || || || ||||||||||||||| || | ||||| Sbjct 5074 AAGATTGAGGGCAAGGGCAATGGCATCAAGACCGTCATTGTCAACCTGACCAGTGTCGCC 5133 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || | || | ||||| | | |||||| | || || ||||| | ||| || || || Sbjct 5134 CAGTCTCTGGCCCGCCCCGGCGCCTACCTCATCAAGTACTTCGGTTTCGAGCTCGGTGCC 5193 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 ||||| | |||| | | |||| || | ||| | ||||| | || | || Sbjct 5194 CAGACCAACATTGACCCCGCTGACGATCGTTGGATCATCAACGGTGCCCACGATGGCCCC 5253 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 ||||| ||||| ||||||||||| || ||||||| ||||| || | | ||| | Sbjct 5254 AAGCTTCAGGATCACCTTGACGGCTTCATCAGCAAGTTCGTGCTTTGCAAGAAGTGCAAG 5313 Query 6474 AACCCGGAGACCGA 6487 ||||| ||||| || Sbjct 5314 AACCCTGAGACGGA 5327 >seq3447 Length=175797 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| ||| |||| || ||| ||||||||||||||| ||| ||| || || Sbjct 60743 AACGTTCGTCGCGATGTCGCCGACCAGTTCTACCGCTACAAGATGGAGCGTCTCCAGACC 60802 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| | ||||| ||||| || || || || ||||||||||||||| || | ||||| Sbjct 60803 AAGATTGAGGGCAAGGGCAATGGCATCAAGACCGTCATTGTCAACCTGACCAGTGTCGCC 60862 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || | || | ||||| | | |||||| | || || ||||| | ||| || || || Sbjct 60863 CAGTCTCTGGCCCGCCCCGGCGCCTACCTCATCAAGTACTTCGGTTTCGAGCTCGGTGCC 60922 Query 6354 CAGAC 6358 ||||| Sbjct 60923 CAGAC 60927 >seq1447 Length=194970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| ||| |||| || ||| ||||||||||||||| ||| |||| || || Sbjct 144790 AACGTTCGTCGCGATGTCGCCGACCAGTTCTACCGCTACAAGATGGAGCGCCTCCAGACC 144849 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| | ||||| ||||| || || || || ||||||||||||||| || | ||||| Sbjct 144850 AAGATTGAGGGCAAGGGCAATGGCATCAAGACCGTCATTGTCAACCTGACCAGTGTCGCC 144909 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || | || | ||||| | | |||||| | || || ||||| | ||| || || || Sbjct 144910 CAGTCTCTGGCCCGCCCCGGCGCCTACCTCATCAAGTACTTCGGTTTCGAGCTCGGTGCC 144969 Query 6354 CAG 6356 ||| Sbjct 144970 CAG 144972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334832568612311