Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 131 2e-25
seq18890 82.4 1e-10
>seq24749
Length=740841
Score = 131 bits (144), Expect = 2e-25
Identities = 451/701 (64%), Gaps = 12/701 (2%)
Strand=Plus/Minus
Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079
|| ||||| || || | || ||||| | | ||| || |||| | || || || |||
Sbjct 416256 AGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTC 416197
Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139
|| |||||||| || ||||| || || | || ||||| | | | | |||||| ||
Sbjct 416196 ATGAAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTG 416137
Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199
|| ||||| || || |||||| | | | ||||| ||||| || || | |||
Sbjct 416136 CCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAG 416077
Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259
||||| | | | || || || ||||| || ||||| || | ||| | || ||||| ||
Sbjct 416076 ATGGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTG 416017
Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319
| || | | ||| || | || || || || || || ||||| || | || ||
Sbjct 416016 AAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAG 415957
Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379
||| ||||||| || | | ||||| || || || ||||| || ||||| |
Sbjct 415956 CCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATG 415897
Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439
|| || || | || || ||||| || || || || |||||| |||||| || ||
Sbjct 415896 GCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGG 415837
Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499
|| ||| |||| || || || || || || || | ||||||||| |||||
Sbjct 415836 AAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGT 415777
Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCC 63553
|| || |||| || | || |||||||||||||| ||| | || | | |||
Sbjct 415776 GTGAAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCC 415718
Query 63554 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613
| || || || | |||||||| | ||||||||| || | || | ||||||
Sbjct 415717 C-----CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTG 415663
Query 63614 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63673
|| | || | | ||||| |||| || || || ||||| || | |||
Sbjct 415662 CCGTCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTG 415603
Query 63674 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714
||||| || ||||| | ||| |||||| || | |||||
Sbjct 415602 AAGTCACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 415562
>seq18890
Length=446397
Score = 82.4 bits (90), Expect = 1e-10
Identities = 174/259 (67%), Gaps = 7/259 (3%)
Strand=Plus/Minus
Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017
|| || || ||||| || || || || || ||||||||||||| |||||| | || |
Sbjct 408932 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 408873
Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077
|| || || | || || || || | | || || || || || || || || |||
Sbjct 408872 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 408813
Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 33132
|| || || | | ||| || || || ||||| || || | || || ||||
Sbjct 408812 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 408755
Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192
| || | || ||| ||||||| ||| | ||||| | ||||| || || ||||||||||
Sbjct 408754 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 408695
Query 33193 TTTTATACATATTCCAGAT 33211
| || ||||| | ||| ||
Sbjct 408694 TCTTGTACATTTGCCAAAT 408676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633409587247600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |