Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq24749 131 2e-25 seq18890 82.4 1e-10 >seq24749 Length=740841 Score = 131 bits (144), Expect = 2e-25 Identities = 451/701 (64%), Gaps = 12/701 (2%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| || || | || ||||| | | ||| || |||| | || || || ||| Sbjct 416256 AGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTC 416197 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| || ||||| || || | || ||||| | | | | |||||| || Sbjct 416196 ATGAAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTG 416137 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || || |||||| | | | ||||| ||||| || || | ||| Sbjct 416136 CCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAG 416077 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | | || || || ||||| || ||||| || | ||| | || ||||| || Sbjct 416076 ATGGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTG 416017 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| || | || || || || || || ||||| || | || || Sbjct 416016 AAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAG 415957 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 ||| ||||||| || | | ||||| || || || ||||| || ||||| | Sbjct 415956 CCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATG 415897 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || || || | || || ||||| || || || || |||||| |||||| || || Sbjct 415896 GCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGG 415837 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 || ||| |||| || || || || || || || | ||||||||| ||||| Sbjct 415836 AAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGT 415777 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCC 63553 || || |||| || | || |||||||||||||| ||| | || | | ||| Sbjct 415776 GTGAAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCC 415718 Query 63554 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 | || || || | |||||||| | ||||||||| || | || | |||||| Sbjct 415717 C-----CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTG 415663 Query 63614 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63673 || | || | | ||||| |||| || || || ||||| || | ||| Sbjct 415662 CCGTCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTG 415603 Query 63674 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||||| || ||||| | ||| |||||| || | ||||| Sbjct 415602 AAGTCACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 415562 >seq18890 Length=446397 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/259 (67%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || ||||| || || || || || ||||||||||||| |||||| | || | Sbjct 408932 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 408873 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | || || || || | | || || || || || || || || ||| Sbjct 408872 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 408813 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 33132 || || || | | ||| || || || ||||| || || | || || |||| Sbjct 408812 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 408755 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | || | || ||| ||||||| ||| | ||||| | ||||| || || |||||||||| Sbjct 408754 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 408695 Query 33193 TTTTATACATATTCCAGAT 33211 | || ||||| | ||| || Sbjct 408694 TCTTGTACATTTGCCAAAT 408676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633409587247600