Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11113 113 4e-20 seq23972 104 2e-17 seq22587 102 7e-17 seq1002 96.9 3e-15 seq26527 93.3 4e-14 >seq11113 Length=490148 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| ||||||| || ||||||| |||| || ||||| || Sbjct 77673 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 77614 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| ||||| || || ||||| || ||||| Sbjct 77613 GACACCATCGACAACGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCTCCCGACCA 77555 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || || || | || |||| ||| ||| || ||| ||||| Sbjct 77554 ACAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAA 77495 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 77494 CATTCAGAAGGAGTCGACTCTTCA 77471 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | |||||||| | |||||| | ||||| || || || Sbjct 77445 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 77386 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || |||||| Sbjct 77385 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAA 77326 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || ||||| || | || |||| |||||| || || ||||| Sbjct 77325 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAAC 77266 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||||| || || Sbjct 77265 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCT 77234 >seq23972 Length=267833 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || ||||||| | || |||||||| || Sbjct 225067 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 225126 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | || | ||| ||||| || || ||||| || ||||| Sbjct 225127 GACACCATTGACAACGTCAAGTCGAAGATTCAG-GACAAGGAGGGTATTCCTCCCGACCA 225185 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || || || || | || |||| ||| ||| || ||| ||||| Sbjct 225186 ACAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAA 225245 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || || ||||| || || Sbjct 225246 CATTCAGAAGGAGTCCACTCTTCA 225269 >seq22587 Length=423 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| | || ||||||||||| Sbjct 86 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 145 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || || || || |||| Sbjct 146 GACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACC 203 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | |||||||| ||||| || | || |||| |||||| | ||| |||| Sbjct 204 AACAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACA 263 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||||| || || | ||||| Sbjct 264 ACATCCAGAAGGAGTCCACCCTGCACCTCGTGCT 297 >seq1002 Length=198801 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| |||| || || ||||||| | || |||||||| || ||||| ||| Sbjct 118281 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATC 118222 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| || || || || |||||||||||||| Sbjct 118221 GA--CAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGCC 118164 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | ||||| |||||||| || | || |||| |||||| || ||| ||||| || || | Sbjct 118163 TGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGA 118104 Query 25186 A 25186 | Sbjct 118103 A 118103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| |||| || || ||||||| | || |||||||| || ||||| || Sbjct 112725 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATT 112666 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| || || || || || ||||||||||| Sbjct 112665 GA--CAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAACAGCGCC 112608 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | ||||| |||||||| || | || |||| |||||| || ||| ||||| || || | Sbjct 112607 TGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGA 112548 Query 25186 A 25186 | Sbjct 112547 A 112547 >seq26527 Length=223112 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| | || ||||||||||| Sbjct 222803 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 222744 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || || || || |||| Sbjct 222743 GACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACC 222686 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || || ||||| || | || |||| |||||| | ||| |||| Sbjct 222685 AACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACA 222626 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||||| || || | ||||| Sbjct 222625 ACATCCAGAAGGAGTCCACCCTGCACCTCGTGCT 222592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433179699044015