Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 131 1e-25
seq11113 122 7e-23
seq22587 118 9e-22
seq26527 114 1e-20
seq1002 109 5e-19
seq20756 95.1 1e-14
>seq23972
Length=267833
Score = 131 bits (144), Expect = 1e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | ||||| || || |||||||||| ||||| | ||
Sbjct 225067 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 225126
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || ||||| ||||||||||||||||| ||||| |||
Sbjct 225127 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 225186
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||| | |||||| || || | ||||| ||||||
Sbjct 225187 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAAC 225246
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || |||||
Sbjct 225247 ATTCAGAAGGAGTCCAC 225263
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | |||||||| || |||| | ||||| ||| | ||
Sbjct 225295 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 225354
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || | || || || |||||||||||||| ||||| |||||||||
Sbjct 225355 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 225414
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||| | ||||| ||||||| | || || ||||||
Sbjct 225415 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 225474
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || || ||| | ||||| || | || |||| || ||
Sbjct 225475 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 225521
Score = 98.7 bits (108), Expect = 8e-16
Identities = 126/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| || || || | || ||| | ||| | | ||
Sbjct 224863 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 224922
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || ||||| ||||| || || || || || |||||
Sbjct 224923 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAACAGCGCCTGATTTTCGCTGGCAAG 224982
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | |||||| ||||||| | ||||| |||||||| || || || || |||
Sbjct 224983 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCGACC 225036
>seq11113
Length=490148
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | |||||||| || |||| | ||||| ||| | ||
Sbjct 77445 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 77386
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || || ||||||||||||||||| || ||||| |||
Sbjct 77385 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAA 77326
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||| | |||||| |||||| | || || ||||||
Sbjct 77325 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAAC 77266
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || || ||| | ||||| || | || |||| || ||
Sbjct 77265 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 77219
Score = 122 bits (134), Expect = 7e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | ||||| || || ||||||| || || || | ||
Sbjct 77673 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 77614
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || ||||| ||||||||||||||||| ||||| |||
Sbjct 77613 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 77554
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| || || ||| | |||||| || || | ||||| ||||||
Sbjct 77553 CAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAAC 77494
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 77493 ATTCAGAAGGAGTCGAC 77477
>seq22587
Length=423
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| ||||| ||||| | ||
Sbjct 86 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 145
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || || ||||||||||| || || ||||| |||
Sbjct 146 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 205
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | |||||| |||||| | ||||| ||||||
Sbjct 206 CAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 265
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 266 ATCCAGAAGGAGTCCACC 283
>seq26527
Length=223112
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| ||||| ||||| | ||
Sbjct 222803 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 222744
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || || ||||||||||| || || ||||| |||
Sbjct 222743 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 222684
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||| | |||||| |||||| | ||||| ||||||
Sbjct 222683 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 222624
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 222623 ATCCAGAAGGAGTCCACC 222606
>seq1002
Length=198801
Score = 109 bits (120), Expect = 5e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || || || || |||| ||||| ||||| || |||| ||| |
Sbjct 112726 TTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCAT 112667
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| || || ||||| ||||| || ||
Sbjct 112666 TGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAACAGCGCCT 112607
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||||| ||| | |||||| |||||| | ||||| |||||||| || ||
Sbjct 112606 GATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 112547
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || || || || |||| ||||| ||||| || |||| ||| |
Sbjct 118282 TTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCAT 118223
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| || || || || ||||| || ||
Sbjct 118222 CGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGCCT 118163
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||||| ||| | |||||| |||||| | ||||| |||||||| || ||
Sbjct 118162 GATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGAA 118103
>seq20756
Length=5129
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| || || || | || ||| | ||| | | ||
Sbjct 5066 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 5007
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || ||||| ||||| || || || || || |||||
Sbjct 5006 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAACAGCGCCTGATTTTCGCTGGCAAG 4947
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATC 22412
||| | |||||| ||||||| | ||||| |||||||| || || || ||
Sbjct 4946 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTC 4897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419584353469765
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |